Ame_R019252 (Ailuropoda melanoleuca)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 Ame_R019252 T17363_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.718
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R019252 CSD 79 131

Links

Other CSD family RBPs
Other Ailuropoda melanoleuca RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.962
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.962
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.962
YB-1 Homo sapiens ENSG00000065978 D 0.962
CSDA Felis catus ENSFCAG00000018959 I 0.962
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.962
YBX1 Procavia capensis ENSPCAG00000008397 I 0.962
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.962
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.962
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.944
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.944
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.943
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.925
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.925
YBX2 Microcebus murinus ENSMICG00000012453 I 0.925
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.891
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.811
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.811
YBX1 Felis catus ENSFCAG00000015376 N 0.811
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.803
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.792
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.785
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.774
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.774
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.774
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.774
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.773
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.755
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.755
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.755
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.755
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.739
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.734
CSDA Loxodonta africana ENSLAFG00000017247 I 0.729
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.717
Q00436 Xenopus laevis Q00436 I 0.708
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.708
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.708
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.708
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.708
Csda Rattus norvegicus ENSRNOG00000005480 I 0.708
CSDA Pan troglodytes ENSPTRG00000004681 I 0.708
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.708
P21573 Xenopus laevis P21573 I 0.708
CAA42778 Xenopus laevis CAA42778 I 0.708
AAI06324 Xenopus laevis AAI06324 I 0.708
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.708
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.708
AAH42217 Xenopus laevis AAH42217 I 0.708
AAH41191 Xenopus laevis AAH41191 I 0.708
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.708
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.708
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.708
CSDA Sus scrofa ENSSSCG00000000633 I 0.708
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.708
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.708
AAI30161 Xenopus laevis AAI30161 I 0.708
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.708
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.708
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.708
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.708
CSDA Echinops telfairi ENSETEG00000002557 I 0.708
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.708
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.708
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.708
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.708
CSDA Homo sapiens ENSG00000060138 I 0.708
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.708
LOC100067336 Equus caballus ENSECAG00000023592 I 0.708
CSDA Cavia porcellus ENSCPOG00000011329 I 0.708
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.708
ybx1 Danio rerio ENSDARG00000004757 I 0.708
Csda Dipodomys ordii ENSDORG00000009103 I 0.708
LOC100065107 Equus caballus ENSECAG00000013777 I 0.708
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.708
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.708
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.708
CSDA Macaca mulatta ENSMMUG00000022469 I 0.708
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.708
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.708
Ybx1 Mus musculus ENSMUSG00000028639 I 0.708
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.708
Csda Mus musculus ENSMUSG00000030189 I 0.708
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.708
YBX1 Microcebus murinus ENSMICG00000014984 I 0.708
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.708
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.708
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.708
AAA49715 Xenopus laevis AAA49715 I 0.708
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.708
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.704