YBX2 (Otolemur garnettii)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSOGAG00000004392 T16951_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.704
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.704
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.704
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000003923 CSD 1 51

Links

Other CSD family RBPs
Other Otolemur garnettii RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX2 Microcebus murinus ENSMICG00000012453 I 1.000
YBX2 Vicugna pacos ENSVPAG00000003104 I 1.000
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.961
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.942
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.927
YB-1 Homo sapiens ENSG00000065978 D 0.925
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.925
YBX1 Procavia capensis ENSPCAG00000008397 I 0.925
CSDA Felis catus ENSFCAG00000018959 I 0.925
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.925
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.925
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.925
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.925
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.907
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.907
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.906
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.882
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.836
YBX1 Felis catus ENSFCAG00000015376 N 0.804
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.804
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.804
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.784
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.781
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.766
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.765
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.765
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.765
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.765
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.754
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.745
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.745
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.745
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.745
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.718
Ybx2 Mus musculus ENSMUSG00000018554 I 0.718
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.718
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.718
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.718
YBX2 Sus scrofa ENSSSCG00000017938 I 0.718
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.718
YBX2 Procavia capensis ENSPCAG00000008019 I 0.718
YBX2 Canis familiaris ENSCAFG00000016128 I 0.718
LOC100072964 Equus caballus ENSECAG00000009996 I 0.718
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.718
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.718
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.714
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.710
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.704
AAA49716 Xenopus laevis AAA49716 I 0.704
YBX2 Sorex araneus ENSSARG00000000488 I 0.704
ybx2-a Xenopus laevis AAI69706 D 0.704
P21574 Xenopus laevis P21574 I 0.704
YBX2 Homo sapiens ENSG00000006047 D 0.704
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.704
AAI55915 Xenopus laevis AAI55915 I 0.704
AAI69704 Xenopus laevis AAI69704 I 0.704
CSDA Loxodonta africana ENSLAFG00000017247 I 0.700