CSDA (Spermophilus tridecemlineatus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSSTOG00000002108 T17025_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.704
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000001876 CSD 44 96

Links

Other CSD family RBPs
Other Spermophilus tridecemlineatus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.981
CSDA Felis catus ENSFCAG00000018959 I 0.981
YBX1 Procavia capensis ENSPCAG00000008397 I 0.981
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.981
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.943
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.943
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.943
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.943
YB-1 Homo sapiens ENSG00000065978 D 0.943
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.943
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.926
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.926
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.906
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.906
YBX2 Microcebus murinus ENSMICG00000012453 I 0.906
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.873
YBX1 Felis catus ENSFCAG00000015376 N 0.811
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.792
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.792
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.787
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.774
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.769
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.758
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.755
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.755
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.755
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.755
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.736
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.736
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.736
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.736
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.734
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.734
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.725
CSDA Loxodonta africana ENSLAFG00000017247 I 0.714