CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCAFG00000020238
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000020238
T35203_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.929
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.929
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.929
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.907
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.750
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000002902
RRM
16
82
LFMGGLSFETTDESLRSHFEQWGTLTDCVEMRDPNTKRSRGFGFVTNATVEEVDAARNARHKVDGRV
ENSCAFP00000002902
RRM
105
174
IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKSHPVNGHNCV
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
304 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_046540
Aspergillus clavatus
CADACLAG00004448
N
0.000
AFLA_112630
Aspergillus flavus
CADAFLAG00004997
N
0.000
AFUA_4G07220
Aspergillus fumigatus
CADAFUAG00008115
N
0.000
An04g01620
Aspergillus niger
CADANGAG00003873
N
0.000
ANIA_04431
Aspergillus nidulans
CADANIAG00006023
N
0.000
AO090023000853
Aspergillus oryzae
CADAORAG00007942
N
0.000
BC1G_04554
Botrytis cinerea
BC1G_04554
N
0.000
BDBG_02628
Blastomyces dermatitidis
BDBG_02628
N
0.000
CHGG_10315
Chaetomium globosum
CHGG_10315
N
0.000
CIMG_04080
Coccidioides immitis
CIMG_04080
N
0.000
CPSG_03190
Coccidioides posadasii
CPSG_03190
N
0.000
estExt_fgenesh1_pg.C_130006
Neurospora tetrasperma
estExt_fgenesh1_pg.C_130006
N
0.000
estExt_Genewise1.C_21959
Cryphonectria parasitica
estExt_Genewise1.C_21959
N
0.000
estExt_Genewise1Plus.C_100691
Neurospora discreta
estExt_Genewise1Plus.C_100691
N
0.000
estExt_Genewise1Plus.C_chr_120306
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_120306
N
0.000
e_gw1.3.1237.1
Nectria haematococca
e_gw1.3.1237.1
N
0.000
fgenesh1_pm.C_scaffold_12000103
Trichoderma atroviride
fgenesh1_pm.C_scaffold_12000103
N
0.000
fgenesh1_pm.C_scaffold_17000077
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_17000077
N
0.000
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
Thielavia terrestris
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
N
0.000
FGSG_12899
Fusarium graminearum
FGSG_12899
N
0.000
FOXG_08033
Fusarium oxysporum
FOXG_08033
N
0.000
FVEG_04953
Fusarium verticillioides
FVEG_04953
N
0.000
GLRG_05217
Colletotrichum graminicola
GLRG_05217
N
0.000
GSTUMT00003892001
Tuber melanosporum
GSTUMT00003892001
N
0.000
gw1.2.55.1
Trichoderma virens
gw1.2.55.1
N
0.000
HCAG_05583
Histoplasma capsulatum
HCAG_05583
N
0.000
MCYG_01186
Microsporum canis
MCYG_01186
N
0.000
MGYG_01738
Microsporum gypseum
MGYG_01738
N
0.000
NFIA_109000
Neosartorya fischeri
CADNFIAG00009878
N
0.000
PABG_07569
Paracoccidioides brasiliensis
PABG_07569
N
0.000
Pa_3_6460
Podospora anserina
Pa_3_6460
N
0.000
Pc22g18420
Penicillium chrysogenum
Pc22g18420
N
0.000
PMAA_027060
Penicillium marneffei
PMAA_027060
N
0.000
PTRG_04405
Pyrenophora tritici repentis
PTRG_04405
N
0.000
SS1G_03925
Sclerotinia sclerotiorum
SS1G_03925
N
0.000
TERG_07604
Trichophyton rubrum
TERG_07604
N
0.000
TESG_01394
Trichophyton tonsurans
TESG_01394
N
0.000
VDAG_01960
Verticillium dahliae
VDAG_01960
N
0.000
VDBG_01592
Verticillium albo atrum
VDBG_01592
N
0.000