ENSCAFG00000020238 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000020238 T35203_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.929
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.929
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.929
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.907
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000002902 RRM 16 82
ENSCAFP00000002902 RRM 105 174

Links

Other RRM family RBPs
Other Canis familiaris RBPs

304 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_046540 Aspergillus clavatus CADACLAG00004448 N 0.000
AFLA_112630 Aspergillus flavus CADAFLAG00004997 N 0.000
AFUA_4G07220 Aspergillus fumigatus CADAFUAG00008115 N 0.000
An04g01620 Aspergillus niger CADANGAG00003873 N 0.000
ANIA_04431 Aspergillus nidulans CADANIAG00006023 N 0.000
AO090023000853 Aspergillus oryzae CADAORAG00007942 N 0.000
BC1G_04554 Botrytis cinerea BC1G_04554 N 0.000
BDBG_02628 Blastomyces dermatitidis BDBG_02628 N 0.000
CHGG_10315 Chaetomium globosum CHGG_10315 N 0.000
CIMG_04080 Coccidioides immitis CIMG_04080 N 0.000
CPSG_03190 Coccidioides posadasii CPSG_03190 N 0.000
estExt_fgenesh1_pg.C_130006 Neurospora tetrasperma estExt_fgenesh1_pg.C_130006 N 0.000
estExt_Genewise1.C_21959 Cryphonectria parasitica estExt_Genewise1.C_21959 N 0.000
estExt_Genewise1Plus.C_100691 Neurospora discreta estExt_Genewise1Plus.C_100691 N 0.000
estExt_Genewise1Plus.C_chr_120306 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_120306 N 0.000
e_gw1.3.1237.1 Nectria haematococca e_gw1.3.1237.1 N 0.000
fgenesh1_pm.C_scaffold_12000103 Trichoderma atroviride fgenesh1_pm.C_scaffold_12000103 N 0.000
fgenesh1_pm.C_scaffold_17000077 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_17000077 N 0.000
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA Thielavia terrestris fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA N 0.000
FGSG_12899 Fusarium graminearum FGSG_12899 N 0.000
FOXG_08033 Fusarium oxysporum FOXG_08033 N 0.000
FVEG_04953 Fusarium verticillioides FVEG_04953 N 0.000
GLRG_05217 Colletotrichum graminicola GLRG_05217 N 0.000
GSTUMT00003892001 Tuber melanosporum GSTUMT00003892001 N 0.000
gw1.2.55.1 Trichoderma virens gw1.2.55.1 N 0.000
HCAG_05583 Histoplasma capsulatum HCAG_05583 N 0.000
MCYG_01186 Microsporum canis MCYG_01186 N 0.000
MGYG_01738 Microsporum gypseum MGYG_01738 N 0.000
NFIA_109000 Neosartorya fischeri CADNFIAG00009878 N 0.000
PABG_07569 Paracoccidioides brasiliensis PABG_07569 N 0.000
Pa_3_6460 Podospora anserina Pa_3_6460 N 0.000
Pc22g18420 Penicillium chrysogenum Pc22g18420 N 0.000
PMAA_027060 Penicillium marneffei PMAA_027060 N 0.000
PTRG_04405 Pyrenophora tritici repentis PTRG_04405 N 0.000
SS1G_03925 Sclerotinia sclerotiorum SS1G_03925 N 0.000
TERG_07604 Trichophyton rubrum TERG_07604 N 0.000
TESG_01394 Trichophyton tonsurans TESG_01394 N 0.000
VDAG_01960 Verticillium dahliae VDAG_01960 N 0.000
VDBG_01592 Verticillium albo atrum VDBG_01592 N 0.000