CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FVEG_04953
(
Fusarium verticillioides
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FVEG_04953
T17659_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FVEG_04953T0
KH
145
198
TKGSTQKMIKDETGADITTRGSYYPNKSMATAANPPLYLHITSTSKSGLESAVA
FVEG_04953T0
KH
250
316
FNLRAQVVGHGGAYVKHIQQETTCRVQIKGRGSGYLEAATNQESDEDMFLHVTGPDPNMVAKAKELC
Links
Other
KH
family RBPs
Other
Fusarium verticillioides
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FOXG_08033
Fusarium oxysporum
FOXG_08033
N
0.967
FGSG_12899
Fusarium graminearum
FGSG_12899
N
0.886
gw1.2.55.1
Trichoderma virens
gw1.2.55.1
N
0.886
fgenesh1_pm.C_scaffold_12000103
Trichoderma atroviride
fgenesh1_pm.C_scaffold_12000103
N
0.881
e_gw1.3.1237.1
Nectria haematococca
e_gw1.3.1237.1
N
0.852
GLRG_05217
Colletotrichum graminicola
GLRG_05217
N
0.850
estExt_fgenesh1_pg.C_130006
Neurospora tetrasperma
estExt_fgenesh1_pg.C_130006
N
0.817
estExt_fgenesh1_pm.C_70243
Myceliophthora thermophila
estExt_fgenesh1_pm.C_70243
N
0.810
estExt_Genewise1Plus.C_100691
Neurospora discreta
estExt_Genewise1Plus.C_100691
N
0.810
VDBG_01592
Verticillium albo atrum
VDBG_01592
N
0.802
ACLA_046540
Aspergillus clavatus
CADACLAG00004448
N
0.802
estExt_Genewise1.C_21959
Cryphonectria parasitica
estExt_Genewise1.C_21959
N
0.802
VDAG_01960
Verticillium dahliae
VDAG_01960
N
0.802
SS1G_03925
Sclerotinia sclerotiorum
SS1G_03925
N
0.794
NFIA_109000
Neosartorya fischeri
CADNFIAG00009878
N
0.786
AFUA_4G07220
Aspergillus fumigatus
CADAFUAG00008115
N
0.778
Pa_3_6460
Podospora anserina
Pa_3_6460
N
0.772
CPSG_03190
Coccidioides posadasii
CPSG_03190
N
0.764
CIMG_04080
Coccidioides immitis
CIMG_04080
N
0.764
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
Thielavia terrestris
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
N
0.764
BC1G_04554
Botrytis cinerea
BC1G_04554
N
0.756
AFLA_112630
Aspergillus flavus
CADAFLAG00004997
N
0.754
AO090023000853
Aspergillus oryzae
CADAORAG00007942
N
0.754
ANIA_04431
Aspergillus nidulans
CADANIAG00006023
N
0.754
An04g01620
Aspergillus niger
CADANGAG00003873
N
0.754
Pc22g18420
Penicillium chrysogenum
Pc22g18420
N
0.738
estExt_Genewise1Plus.C_chr_120306
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_120306
N
0.738
HCAG_05583
Histoplasma capsulatum
HCAG_05583
N
0.738
PABG_07569
Paracoccidioides brasiliensis
PABG_07569
N
0.730
fgenesh1_pm.C_scaffold_17000077
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_17000077
N
0.730
BDBG_02628
Blastomyces dermatitidis
BDBG_02628
N
0.730
GSTUMT00003892001
Tuber melanosporum
GSTUMT00003892001
N
0.730
PMAA_027060
Penicillium marneffei
PMAA_027060
N
0.715