fgenesh1_pm.C_scaffold_12000103 (Trichoderma atroviride)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh1_pm.C_scaffold_12000103 T21090_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_12000103 KH 132 187
fgenesh1_pm.C_scaffold_12000103 KH 237 306

Links

Other KH family RBPs
Other Trichoderma atroviride RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.2.55.1 Trichoderma virens gw1.2.55.1 N 0.929
FOXG_08033 Fusarium oxysporum FOXG_08033 N 0.889
FVEG_04953 Fusarium verticillioides FVEG_04953 N 0.881
FGSG_12899 Fusarium graminearum FGSG_12899 N 0.865
GLRG_05217 Colletotrichum graminicola GLRG_05217 N 0.858
estExt_fgenesh1_pm.C_70243 Myceliophthora thermophila estExt_fgenesh1_pm.C_70243 N 0.849
estExt_fgenesh1_pg.C_130006 Neurospora tetrasperma estExt_fgenesh1_pg.C_130006 N 0.833
estExt_Genewise1Plus.C_100691 Neurospora discreta estExt_Genewise1Plus.C_100691 N 0.825
estExt_Genewise1.C_21959 Cryphonectria parasitica estExt_Genewise1.C_21959 N 0.825
SS1G_03925 Sclerotinia sclerotiorum SS1G_03925 N 0.817
e_gw1.3.1237.1 Nectria haematococca e_gw1.3.1237.1 N 0.817
ACLA_046540 Aspergillus clavatus CADACLAG00004448 N 0.810
VDAG_01960 Verticillium dahliae VDAG_01960 N 0.810
VDBG_01592 Verticillium albo atrum VDBG_01592 N 0.810
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA Thielavia terrestris fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA N 0.795
NFIA_109000 Neosartorya fischeri CADNFIAG00009878 N 0.794
Pa_3_6460 Podospora anserina Pa_3_6460 N 0.787
AFUA_4G07220 Aspergillus fumigatus CADAFUAG00008115 N 0.786
AO090023000853 Aspergillus oryzae CADAORAG00007942 N 0.770
fgenesh1_pm.C_scaffold_17000077 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_17000077 N 0.770
An04g01620 Aspergillus niger CADANGAG00003873 N 0.770
AFLA_112630 Aspergillus flavus CADAFLAG00004997 N 0.770
ANIA_04431 Aspergillus nidulans CADANIAG00006023 N 0.762
HCAG_05583 Histoplasma capsulatum HCAG_05583 N 0.762
BDBG_02628 Blastomyces dermatitidis BDBG_02628 N 0.762
GSTUMT00003892001 Tuber melanosporum GSTUMT00003892001 N 0.762
CPSG_03190 Coccidioides posadasii CPSG_03190 N 0.762
CIMG_04080 Coccidioides immitis CIMG_04080 N 0.762
PABG_07569 Paracoccidioides brasiliensis PABG_07569 N 0.762
estExt_Genewise1Plus.C_chr_120306 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_120306 N 0.754
Pc22g18420 Penicillium chrysogenum Pc22g18420 N 0.754
BC1G_04554 Botrytis cinerea BC1G_04554 N 0.731
MCYG_01186 Microsporum canis MCYG_01186 N 0.722
PMAA_027060 Penicillium marneffei PMAA_027060 N 0.714
MGYG_01738 Microsporum gypseum MGYG_01738 N 0.706
TERG_07604 Trichophyton rubrum TERG_07604 N 0.706
TESG_01394 Trichophyton tonsurans TESG_01394 N 0.706