CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF4
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000013920
T37865_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL4
M004_0.6
Homo sapiens
KGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00004
1.000
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.768
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.744
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000013578
RRM
56
125
LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN
ENSGGOP00000013578
RRM
154
222
LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS
ENSGGOP00000013578
RRM
425
473
IYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.886
CELF4
Monodelphis domestica
ENSMODG00000000306
N
0.000
Celf4
Mus musculus
ENSMUSG00000024268
I
0.995
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.886
CELF4
Sus scrofa
ENSSSCG00000003748
N
0.000
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.000
ENSCAFG00000017759
Canis familiaris
ENSCAFG00000017759
N
0.000
LOC100386457
Callithrix jacchus
ENSCJAG00000021135
I
1.000