LOC100386457 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000021135 T35691_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		1.000
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.768
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.744
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000039350 RRM 56 125
ENSCJAP00000039350 RRM 144 212
ENSCJAP00000039350 RRM 399 435
ENSCJAP00000039355 RRM 27 95
ENSCJAP00000039355 RRM 298 346
ENSCJAP00000039356 RRM 56 125
ENSCJAP00000039356 RRM 154 222
ENSCJAP00000039356 RRM 425 473
ENSCJAP00000039357 RRM 30 98

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF4 Macaca mulatta ENSMMUG00000006866 I 1.000
CELF4 Gorilla gorilla ENSGGOG00000013920 I 1.000
Celf4 Mus musculus ENSMUSG00000024268 I 1.000
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 1.000
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 1.000
CELF4 Pan troglodytes ENSPTRG00000009982 N 1.000
BRUNOL4 Homo sapiens ENSG00000101489 D 1.000
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 1.000
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.995
CELF4 Tupaia belangeri ENSTBEG00000010647 I 0.992
ACH69784 Xenopus laevis ACH69784 I 0.989
Ame_R008026 Ailuropoda melanoleuca Ame_R008026 N 0.986
CELF4 Monodelphis domestica ENSMODG00000000306 N 0.966
CELF4 Sus scrofa ENSSSCG00000003748 N 0.958
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.936
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.907
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.899
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.886
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.882
ENSCAFG00000017759 Canis familiaris ENSCAFG00000017759 N 0.881
fgenesh2_pg.scaffold_186000062 Branchiostoma floridae fgenesh2_pg.scaffold_186000062 N 0.870
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.862
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.860
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.842
Celf5 Mus musculus ENSMUSG00000034818 N 0.841
CELF4 Oryzias latipes ENSORLG00000008913 I 0.839
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.831
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.830
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.817
CELF5 Ornithorhynchus anatinus ENSOANG00000009501 N 0.812
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.806
celf5 Danio rerio ENSDARG00000071375 I 0.791
CELF5 Oryzias latipes ENSORLG00000004600 I 0.787
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.787
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.782
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.777
BRUNOL5 Homo sapiens ENSG00000161082 D 0.773
ACH69785 Xenopus laevis ACH69785 I 0.773
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.763
AAA81375 Xenopus laevis AAA81375 I 0.763
AAH57704 Xenopus laevis AAH57704 I 0.763
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.763
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.763
AAH72134 Xenopus laevis AAH72134 I 0.763
Q91579 Xenopus laevis Q91579 I 0.763
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.758
AAH46942 Xenopus laevis AAH46942 I 0.758
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.758
celf3 Danio rerio ENSDARG00000034668 I 0.754
Celf6 Mus musculus ENSMUSG00000032297 I 0.754
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.754
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.752
CELF6 Bos taurus ENSBTAG00000014092 I 0.749
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.749
BRUNOL6 Homo sapiens ENSG00000140488 D 0.749
CELF6 Felis catus ENSFCAG00000016249 I 0.749
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.749
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.749
HEXA Macaca mulatta ENSMMUG00000010687 I 0.749
CELF6 Sus scrofa ENSSSCG00000001928 I 0.749
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.749
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.749
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.744
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.744
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.743
CELF4 Otolemur garnettii ENSOGAG00000010018 I 0.742
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.741
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.735
CELF3 Danio rerio ENSDARG00000006983 I 0.729
CELF3 Oryzias latipes ENSORLG00000010447 I 0.717
CELF3 Canis familiaris ENSCAFG00000012794 I 0.711
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.711
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.711
CELF3 Equus caballus ENSECAG00000020365 I 0.711
CELF3 Homo sapiens ENSG00000159409 I 0.711
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.711
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.711
Celf3 Mus musculus ENSMUSG00000028137 I 0.711
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.711
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.711
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.711
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.711
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.711
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.711