CELF4 (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000024790 T39776_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.882
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.871
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.848
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.754
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000015837 RRM 36 104
ENSOCUP00000015837 RRM 308 356
ENSOCUP00000017293 RRM 56 125
ENSOCUP00000017293 RRM 153 221
ENSOCUP00000017293 RRM 421 491

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 1.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 1.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.995
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.995
CELF4 Tupaia belangeri ENSTBEG00000010647 I 0.992
CELF4 Monodelphis domestica ENSMODG00000000306 N 0.966
CELF4 Sus scrofa ENSSSCG00000003748 N 0.958
CELF4 Oryzias latipes ENSORLG00000008913 I 0.952
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.929
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.919
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.907
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.891
celf5 Danio rerio ENSDARG00000071375 I 0.890
ACH69784 Xenopus laevis ACH69784 I 0.886
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.886
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.886
BRUNOL4 Homo sapiens ENSG00000101489 D 0.886
CELF5 Oryzias latipes ENSORLG00000004600 I 0.886
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.882
ENSCAFG00000017759 Canis familiaris ENSCAFG00000017759 N 0.881
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.881
ACH69785 Xenopus laevis ACH69785 I 0.871
BRUNOL5 Homo sapiens ENSG00000161082 D 0.871
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.867
AAH72134 Xenopus laevis AAH72134 I 0.867
AAA81375 Xenopus laevis AAA81375 I 0.867
Q91579 Xenopus laevis Q91579 I 0.867
AAH57704 Xenopus laevis AAH57704 I 0.867
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.867
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.862
AAH46942 Xenopus laevis AAH46942 I 0.862
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.862
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.862
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.862
celf3 Danio rerio ENSDARG00000034668 I 0.857
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.852
Celf6 Mus musculus ENSMUSG00000032297 I 0.852
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.852
HEXA Macaca mulatta ENSMMUG00000010687 I 0.848
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.848
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.848
CELF6 Felis catus ENSFCAG00000016249 I 0.848
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.848
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.848
BRUNOL6 Homo sapiens ENSG00000140488 D 0.848
CELF6 Bos taurus ENSBTAG00000014092 I 0.848
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.848
CELF6 Sus scrofa ENSSSCG00000001928 I 0.848
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.844
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.843
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.843
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.833
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.830
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.829
CELF3 Danio rerio ENSDARG00000006983 I 0.824
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.817
CELF3 Oryzias latipes ENSORLG00000010447 I 0.817
CELF3 Equus caballus ENSECAG00000020365 I 0.810
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.810
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.810
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.810
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.810
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.810
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.810
CELF3 Homo sapiens ENSG00000159409 I 0.810
CELF3 Canis familiaris ENSCAFG00000012794 I 0.810
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.810
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.810
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.810
Celf3 Mus musculus ENSMUSG00000028137 I 0.810
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.810
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.806
CELF3 Sus scrofa ENSSSCG00000006618 I 0.795
Bm1_27610 Brugia malayi Bm1_27610 I 0.790
CELF3 Procavia capensis ENSPCAG00000001623 I 0.786
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.781
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.781
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.776
CRE09771 Caenorhabditis remanei CRE09771 I 0.768
CBG15358 Caenorhabditis briggsae CBG15358 I 0.768
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.763
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.758
celf4 Danio rerio ENSDARG00000070045 I 0.757
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.757
unc-75 Caenorhabditis elegans C17D12.2 D 0.754
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.741
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.741
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.739
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.735
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.731
CELF3 Oryzias latipes ENSORLG00000002630 I 0.730
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.729
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.729
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.725
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.724
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.722
CELF5 Canis familiaris ENSCAFG00000019263 I 0.714
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.710
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.710
CELF5 Sus scrofa ENSSSCG00000013476 I 0.706
CELF5 Bos taurus ENSBTAG00000021774 I 0.701