Pabpc5 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000034732 T39332_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6 		Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		0.961
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000047756 RRM 19 89
ENSMUSP00000047756 RRM 107 175
ENSMUSP00000047756 RRM 200 268
ENSMUSP00000047756 RRM 303 371
ENSMUSP00000108993 RRM 19 89
ENSMUSP00000108993 RRM 107 175
ENSMUSP00000108993 RRM 200 268
ENSMUSP00000108993 RRM 303 371
ENSMUSP00000108995 RRM 19 89
ENSMUSP00000108995 RRM 107 175
ENSMUSP00000108995 RRM 200 268
ENSMUSP00000108995 RRM 303 371

Links

Other RRM family RBPs
Other Mus musculus RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A5D7H7_BOVIN Bos taurus ENSBTAG00000010235 N 0.000
C14orf21 Pan troglodytes ENSPTRG00000033813 N 0.000
C14orf21 Procavia capensis ENSPCAG00000002545 N 0.000
C14orf21 Oryctolagus cuniculus ENSOCUG00000002948 N 0.000
C14orf21 Loxodonta africana ENSLAFG00000028287 N 0.000
C14orf21 Homo sapiens ENSG00000196943 N 0.000
C14orf21 Cavia porcellus ENSCPOG00000014406 N 0.000
C14orf21 Sus scrofa ENSSSCG00000001990 N 0.000
ENSPPYG00000005698 Pongo pygmaeus ENSPPYG00000005698 N 0.000
LOC100054451 Equus caballus ENSECAG00000024171 N 0.000
LOC100396802 Callithrix jacchus ENSCJAG00000006675 N 0.000