GSVIVG00034966001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00034966001 T44780_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00034966001 RRM 43 111
GSVIVT00034966001 RRM 134 203

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003323 Ricinus communis 29889.m003323 N 0.899
A9PE96_POPTR Populus trichocarpa POPTR_0002s19380 N 0.702
BGIOSIBCE029031 Oryza indica BGIOSIBCE029031 N 0.777
BRADI4G08727 Brachypodium distachyon BRADI4G08727 N 0.716
cassava42168.valid.m1 Manihot esculenta cassava42168.valid.m1 N 0.871
cassava42169.valid.m1 Manihot esculenta cassava42169.valid.m1 N 0.871
chr4.CM0333.80.nd Lotus japonicus chr4.CM0333.80.nd N 0.856
Cucsa.247020 Cucumis sativus Cucsa.247020 N 0.893
e_gw1.158.95.1 Physcomitrella patens e_gw1.158.95.1 N 0.771
FCA Oryza sativa LOC_Os09g03610 N 0.777
FCA Arabidopsis thaliana AT4G16280-TAIR-G N 0.827
Glyma07g36630.1 Glycine max Glyma07g36630.1 N 0.893
Glyma17g03960.1 Glycine max Glyma17g03960.1 N 0.886
GRMZM2G065276 Zea mays GRMZM2G065276 N 0.799
GSVIVG00028149001 Vitis vinifera GSVIVG00028149001 N 0.729
gw1.47.198.1 Physcomitrella patens gw1.47.198.1 N 0.729
MDP0000211002 Malus x domestica MDP0000211002 N 0.705
Medtr8g136920 Medicago truncatula Medtr8g136920 N 0.850
PK18808.1 Cannabis sativa PK18808.1 N 0.857
ppa002369m Prunus persica ppa002369m N 0.886
Sb02g014690 Sorghum bicolor Sb02g014690 N 0.791
XM_002868098.1 Arabidopsis lyrata fgenesh2_kg.7__2690__AT4G16280.3 N 0.813