FCA (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os09g03610 T45125_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os09g03610.1 RRM 124 192
LOC_Os09g03610.1 RRM 215 284
LOC_Os09g03610.2 RRM 124 192
LOC_Os09g03610.2 RRM 215 284
LOC_Os09g03610.3 RRM 124 192
LOC_Os09g03610.3 RRM 215 284
LOC_Os09g03610.4 RRM 124 192
LOC_Os09g03610.4 RRM 215 284

Links

Other RRM family RBPs
Other Oryza sativa RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE029031 Oryza indica BGIOSIBCE029031 N 1.000
Sb02g014690 Sorghum bicolor Sb02g014690 N 0.892
GRMZM2G065276 Zea mays GRMZM2G065276 N 0.878
BRADI4G08727 Brachypodium distachyon BRADI4G08727 N 0.858
29889.m003323 Ricinus communis 29889.m003323 N 0.791
GSVIVG00034966001 Vitis vinifera GSVIVG00034966001 N 0.777
ppa002369m Prunus persica ppa002369m N 0.757
Glyma07g36630.1 Glycine max Glyma07g36630.1 N 0.757
Glyma17g03960.1 Glycine max Glyma17g03960.1 N 0.750
PK18808.1 Cannabis sativa PK18808.1 N 0.743
cassava42168.valid.m1 Manihot esculenta cassava42168.valid.m1 N 0.743
cassava42169.valid.m1 Manihot esculenta cassava42169.valid.m1 N 0.743
Medtr8g136920 Medicago truncatula Medtr8g136920 N 0.743
chr4.CM0333.80.nd Lotus japonicus chr4.CM0333.80.nd N 0.734
FCA Arabidopsis thaliana AT4G16280-TAIR-G N 0.734
Cucsa.247020 Cucumis sativus Cucsa.247020 N 0.729
XM_002868098.1 Arabidopsis lyrata fgenesh2_kg.7__2690__AT4G16280.3 N 0.727
e_gw1.158.95.1 Physcomitrella patens e_gw1.158.95.1 N 0.700