chr4.CM0333.80.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr4.CM0333.80.nd T55885_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0333.80.nd RRM 116 183
chr4.CM0333.80.nd RRM 207 276

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g03960.1 Glycine max Glyma17g03960.1 N 0.921
Glyma07g36630.1 Glycine max Glyma07g36630.1 N 0.921
Medtr8g136920 Medicago truncatula Medtr8g136920 N 0.893
ppa002369m Prunus persica ppa002369m N 0.886
29889.m003323 Ricinus communis 29889.m003323 N 0.863
GSVIVG00034966001 Vitis vinifera GSVIVG00034966001 N 0.856
Cucsa.247020 Cucumis sativus Cucsa.247020 N 0.836
PK18808.1 Cannabis sativa PK18808.1 N 0.836
cassava42169.valid.m1 Manihot esculenta cassava42169.valid.m1 N 0.807
cassava42168.valid.m1 Manihot esculenta cassava42168.valid.m1 N 0.807
FCA Arabidopsis thaliana AT4G16280-TAIR-G N 0.777
XM_002868098.1 Arabidopsis lyrata fgenesh2_kg.7__2690__AT4G16280.3 N 0.777
GRMZM2G065276 Zea mays GRMZM2G065276 N 0.741
Sb02g014690 Sorghum bicolor Sb02g014690 N 0.734
BGIOSIBCE029031 Oryza indica BGIOSIBCE029031 N 0.734
FCA Oryza sativa LOC_Os09g03610 N 0.734
e_gw1.158.95.1 Physcomitrella patens e_gw1.158.95.1 N 0.707
MDP0000211002 Malus x domestica MDP0000211002 N 0.703