Cucsa.247020 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.247020 T49605_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.247020.1 RRM 145 214
Cucsa.247020.1 RRM 236 304
Cucsa.247020.2 RRM 145 214
Cucsa.247020.2 RRM 236 304
Cucsa.247020.3 RRM 145 214
Cucsa.247020.3 RRM 236 304
Cucsa.247020.4 RRM 145 214
Cucsa.247020.4 RRM 236 304
Cucsa.247020.5 RRM 145 214
Cucsa.247020.5 RRM 236 304
Cucsa.247020.6 RRM 145 214
Cucsa.247020.6 RRM 236 304
Cucsa.247020.7 RRM 145 214
Cucsa.247020.7 RRM 236 304

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003323 Ricinus communis 29889.m003323 N 0.900
GSVIVG00034966001 Vitis vinifera GSVIVG00034966001 N 0.893
cassava42169.valid.m1 Manihot esculenta cassava42169.valid.m1 N 0.892
cassava42168.valid.m1 Manihot esculenta cassava42168.valid.m1 N 0.892
Glyma07g36630.1 Glycine max Glyma07g36630.1 N 0.886
ppa002369m Prunus persica ppa002369m N 0.885
Glyma17g03960.1 Glycine max Glyma17g03960.1 N 0.879
PK18808.1 Cannabis sativa PK18808.1 N 0.856
Medtr8g136920 Medicago truncatula Medtr8g136920 N 0.850
chr4.CM0333.80.nd Lotus japonicus chr4.CM0333.80.nd N 0.836
FCA Arabidopsis thaliana AT4G16280-TAIR-G N 0.793
XM_002868098.1 Arabidopsis lyrata fgenesh2_kg.7__2690__AT4G16280.3 N 0.779
e_gw1.158.95.1 Physcomitrella patens e_gw1.158.95.1 N 0.771
gw1.47.198.1 Physcomitrella patens gw1.47.198.1 N 0.770
Sb02g014690 Sorghum bicolor Sb02g014690 N 0.748
GSVIVG00028149001 Vitis vinifera GSVIVG00028149001 N 0.741
GRMZM2G065276 Zea mays GRMZM2G065276 N 0.736
FCA Oryza sativa LOC_Os09g03610 N 0.729
BGIOSIBCE029031 Oryza indica BGIOSIBCE029031 N 0.729
A9PE96_POPTR Populus trichocarpa POPTR_0002s19380 N 0.721