cassava42168.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava42168.valid.m1 T49390_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava42168.valid.m1 RRM 164 233
cassava42168.valid.m1 RRM 255 323

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42169.valid.m1 Manihot esculenta cassava42169.valid.m1 N 1.000
29889.m003323 Ricinus communis 29889.m003323 N 0.921
Cucsa.247020 Cucumis sativus Cucsa.247020 N 0.892
ppa002369m Prunus persica ppa002369m N 0.878
GSVIVG00034966001 Vitis vinifera GSVIVG00034966001 N 0.871
PK18808.1 Cannabis sativa PK18808.1 N 0.871
Glyma07g36630.1 Glycine max Glyma07g36630.1 N 0.864
Glyma17g03960.1 Glycine max Glyma17g03960.1 N 0.857
FCA Arabidopsis thaliana AT4G16280-TAIR-G N 0.836
Medtr8g136920 Medicago truncatula Medtr8g136920 N 0.814
chr4.CM0333.80.nd Lotus japonicus chr4.CM0333.80.nd N 0.807
XM_002868098.1 Arabidopsis lyrata fgenesh2_kg.7__2690__AT4G16280.3 N 0.807
Sb02g014690 Sorghum bicolor Sb02g014690 N 0.770
e_gw1.158.95.1 Physcomitrella patens e_gw1.158.95.1 N 0.750
GRMZM2G065276 Zea mays GRMZM2G065276 N 0.750
gw1.47.198.1 Physcomitrella patens gw1.47.198.1 N 0.748
BGIOSIBCE029031 Oryza indica BGIOSIBCE029031 N 0.743
FCA Oryza sativa LOC_Os09g03610 N 0.743
GSVIVG00028149001 Vitis vinifera GSVIVG00028149001 N 0.741
A9PE96_POPTR Populus trichocarpa POPTR_0002s19380 N 0.714