Ppa-etr-1 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA28330 T45855_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PPA28330 RRM 155 225

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.732
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.803
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.718
BRUNOL6 Homo sapiens ENSG00000140488 D 0.718
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.704
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.718
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.718
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.718
etr-1 Caenorhabditis elegans T01D1.2 D 0.845
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.803
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.718
GD23834 Drosophila simulans FBgn0195204 I 0.817
GF19661 Drosophila ananassae FBgn0096668 I 0.817
GG23781 Drosophila erecta FBgn0115920 I 0.803
GI17947 Drosophila mojavensis FBgn0140687 I 0.817
GM26796 Drosophila sechellia FBgn0181649 I 0.817
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.718
HEXA Macaca mulatta ENSMMUG00000010687 I 0.718
ISCW008885 Ixodes scapularis ISCW008885 I 0.831
ISCW010799 Ixodes scapularis ISCW010799 I 0.732
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.775
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.718
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.803
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.732