SB01G046740 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb01g046740 T45906_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb01g046740.1 RRM 172 241
Sb01g046740.1 RRM 269 339
Sb01g046740.1 RRM 472 526

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001297 Ricinus communis 30183.m001297 N 0.816
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.980
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.764
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.782
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.763
BGIOSIBCE032206 Oryza indica BGIOSIBCE032206 N 0.777
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.924
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.913
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.802
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.756
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.796
estExt_Genewise1.C_320014 Selaginella moellendorfii estExt_Genewise1.C_320014 N 0.706
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.777
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.772
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.777
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.807
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.801
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.908
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.908
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.751
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.822
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.959
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.750
MDP0000319817 Malus x domestica MDP0000319817 N 0.806
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.756
mgf012385m Mimulus guttatus mgf012385m N 0.797
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.726
PDK_20s1549391g001 Phoenix dactylifera PDK_20s1549391g001 N 0.741
PK01525.1 Cannabis sativa PK01525.1 N 0.792
PK20903.1 Cannabis sativa PK20903.1 N 0.761
ppa002854m Prunus persica ppa002854m N 0.787
ppa003064m Prunus persica ppa003064m N 0.787
SB01G021020 Sorghum bicolor Sb01g021020 N 0.908
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.772
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.772