CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCLIV_001260
(
Neospora caninum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCLIV_001260
T47140_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCLIV_001260
RRM
54
121
IYVRNLPFKITDDELYDIFGKYGAVRQIRKGNTDKTRGSAFVVYEDVFDARAAVDQLSGFNVAGRYLI
Links
Other
RRM
family RBPs
Other
Neospora caninum
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_03224
Botrytis cinerea
BC1G_03224
N
0.000
CHGG_04655
Chaetomium globosum
CHGG_04655
N
0.000
estExt_fgenesh1_pg.C_30620
Cryphonectria parasitica
estExt_fgenesh1_pg.C_30620
N
0.000
e_gw1.2.858.1
Trichoderma reesei
e_gw1.2.858.1
N
0.000
e_gw1.3.1867.1
Neurospora discreta
e_gw1.3.1867.1
N
0.000
fgenesh1_pg.C_scaffold_2000270
Trichoderma atroviride
fgenesh1_pg.C_scaffold_2000270
N
0.000
fgenesh1_pm.1_#_413
Myceliophthora thermophila
fgenesh1_pm.1_#_413
N
0.000
fgenesh1_pm.C_scaffold_4000255
Neurospora tetrasperma
fgenesh1_pm.C_scaffold_4000255
N
0.000
FOXG_08275
Fusarium oxysporum
FOXG_08275
N
0.000
GLRG_05733
Colletotrichum graminicola
GLRG_05733
N
0.000
gw1.1.1031.1
Trichoderma virens
gw1.1.1031.1
N
0.000
NCU09742
Neurospora crassa
NCU09742
N
0.000
Pa_6_3170
Podospora anserina
Pa_6_3170
N
0.000
SS1G_08605
Sclerotinia sclerotiorum
SS1G_08605
N
0.000
VDBG_08298
Verticillium albo atrum
VDBG_08298
N
0.000