cassava1155.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava1155.valid.m1 T49088_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava1155.valid.m1 RRM 113 154
cassava1155.valid.m1 RRM 177 248
cassava1155.valid.m1 RRM 295 359

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003218 Ricinus communis 29801.m003218 I 0.802
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.705
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.758
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.763
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.865
cassava1154.valid.m1 Manihot esculenta cassava1154.valid.m1 N 0.928
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.700
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.710
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.710
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.720
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.705
PK15272.1 Cannabis sativa PK15272.1 I 0.705
ppa005661m Prunus persica ppa005661m I 0.720
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.710