Glyma07g33300.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma07g33300.1 T52703_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma07g33300.1 RRM 103 172
Glyma07g33300.1 RRM 197 268
Glyma07g33300.1 RRM 316 380

Links

Other RRM family RBPs
Other Glycine max RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.981
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.952
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.913
PK15272.1 Cannabis sativa PK15272.1 I 0.841
29801.m003218 Ricinus communis 29801.m003218 I 0.836
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.836
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.831
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.821
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.821
ppa005661m Prunus persica ppa005661m I 0.821
30170.m014217 Ricinus communis 30170.m014217 I 0.812
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.807
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.807
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.797
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.792
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.792
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.792
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.792
ppa005903m Prunus persica ppa005903m I 0.792
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.792
PK00840.1 Cannabis sativa PK00840.1 I 0.788
MDP0000136330 Malus x domestica MDP0000136330 I 0.787
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.787
MDP0000200455 Malus x domestica MDP0000200455 I 0.787
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.787
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.783
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.773
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.773
mgf011075m Mimulus guttatus mgf011075m I 0.773
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.773
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.768
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.763
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.763
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.763
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.760
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.758
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.758
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.758
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.754
mgf000380m Mimulus guttatus mgf000380m I 0.754
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.749
MDP0000176892 Malus x domestica MDP0000176892 N 0.740
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.734
MDP0000262005 Malus x domestica MDP0000262005 N 0.734
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.729
MDP0000142206 Malus x domestica MDP0000142206 N 0.729
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.729
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.729
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.720
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.715
mgf012795m Mimulus guttatus mgf012795m I 0.715
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.710
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.710
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.707
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.707
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.705
PK10695.1 Cannabis sativa PK10695.1 I 0.705
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.702
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.702
30169.m006434 Ricinus communis 30169.m006434 I 0.702
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.702
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.702
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.702
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.702
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.700