29801.m003218 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29801.m003218 T48690_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
29801.m003218 RRM 108 176
29801.m003218 RRM 200 271
29801.m003218 RRM 319 383

Links

Other RRM family RBPs
Other Ricinus communis RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.913
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.865
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.860
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.836
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.831
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.821
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.816
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.812
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.812
PK15272.1 Cannabis sativa PK15272.1 I 0.807
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.802
ppa005661m Prunus persica ppa005661m I 0.802
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.797
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.792
PK00840.1 Cannabis sativa PK00840.1 I 0.784
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.783
ppa005903m Prunus persica ppa005903m I 0.783
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.779
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.778
MDP0000136330 Malus x domestica MDP0000136330 I 0.778
MDP0000200455 Malus x domestica MDP0000200455 I 0.778
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.778
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.768
30170.m014217 Ricinus communis 30170.m014217 I 0.763
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.763
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.763
cassava1154.valid.m1 Manihot esculenta cassava1154.valid.m1 N 0.762
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.758
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.758
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.758
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.758
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.758
mgf000380m Mimulus guttatus mgf000380m I 0.758
mgf011075m Mimulus guttatus mgf011075m I 0.754
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.749
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.749
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.749
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.749
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.749
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.744
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.744
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.744
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.739
mgf012795m Mimulus guttatus mgf012795m I 0.733
MDP0000176892 Malus x domestica MDP0000176892 N 0.731
mgf013285m Mimulus guttatus mgf013285m N 0.715
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.714
MDP0000142206 Malus x domestica MDP0000142206 N 0.710
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.709
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.707
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.707
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.707
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.707
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.707
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.707
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.705
MDP0000262005 Malus x domestica MDP0000262005 N 0.705
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.705
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.700