chr4.CM0079.170.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr4.CM0079.170.nc T55875_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0079.170.nc RRM 116 185
chr4.CM0079.170.nc RRM 210 281
chr4.CM0079.170.nc RRM 330 394

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.952
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.932
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.923
PK15272.1 Cannabis sativa PK15272.1 I 0.841
29801.m003218 Ricinus communis 29801.m003218 I 0.821
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.812
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.807
ppa005661m Prunus persica ppa005661m I 0.807
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.792
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.787
30170.m014217 Ricinus communis 30170.m014217 I 0.783
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.783
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.783
MDP0000136330 Malus x domestica MDP0000136330 I 0.778
MDP0000200455 Malus x domestica MDP0000200455 I 0.778
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.773
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.773
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.773
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.773
ppa005903m Prunus persica ppa005903m I 0.773
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.768
PK00840.1 Cannabis sativa PK00840.1 I 0.764
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.763
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.763
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.763
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.763
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.763
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.758
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.754
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.754
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.750
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.749
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.749
mgf011075m Mimulus guttatus mgf011075m I 0.749
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.734
MDP0000176892 Malus x domestica MDP0000176892 N 0.731
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.730
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.729
mgf000380m Mimulus guttatus mgf000380m I 0.729
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.729
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.725
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.720
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.719
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.719
MDP0000262005 Malus x domestica MDP0000262005 N 0.715
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.715
MDP0000142206 Malus x domestica MDP0000142206 N 0.715
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.710
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.707
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.700
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.700
mgf012795m Mimulus guttatus mgf012795m I 0.700