PK15272.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK15272.1 T31702_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PK15272.1 RRM 182 251
PK15272.1 RRM 275 346
PK15272.1 RRM 395 459

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005661m Prunus persica ppa005661m I 0.865
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.841
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.841
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.841
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.831
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.807
29801.m003218 Ricinus communis 29801.m003218 I 0.807
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.807
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.802
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.792
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.792
ppa005903m Prunus persica ppa005903m I 0.787
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.787
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.787
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.787
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.787
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.779
MDP0000200455 Malus x domestica MDP0000200455 I 0.778
30170.m014217 Ricinus communis 30170.m014217 I 0.778
MDP0000136330 Malus x domestica MDP0000136330 I 0.778
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.778
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.778
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.773
PK00840.1 Cannabis sativa PK00840.1 I 0.769
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.768
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.768
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.768
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.768
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.763
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.763
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.763
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.758
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.758
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.752
mgf011075m Mimulus guttatus mgf011075m I 0.749
mgf000380m Mimulus guttatus mgf000380m I 0.749
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.749
MDP0000262005 Malus x domestica MDP0000262005 N 0.744
MDP0000142206 Malus x domestica MDP0000142206 N 0.744
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.739
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.739
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.739
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.735
mgf012795m Mimulus guttatus mgf012795m I 0.734
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.734
MDP0000176892 Malus x domestica MDP0000176892 N 0.731
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.729
mgf013285m Mimulus guttatus mgf013285m N 0.710
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.705
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.705
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.702
PK10695.1 Cannabis sativa PK10695.1 I 0.700