Medtr4g129250 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr4g129250 T54524_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g129250.1 RRM 118 187
Medtr4g129250.1 RRM 216 287
Medtr4g129250.1 RRM 336 400

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.923
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.913
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.913
PK15272.1 Cannabis sativa PK15272.1 I 0.831
29801.m003218 Ricinus communis 29801.m003218 I 0.816
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.802
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.802
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.797
ppa005661m Prunus persica ppa005661m I 0.792
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.783
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.773
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.773
PK00840.1 Cannabis sativa PK00840.1 I 0.769
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.768
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.768
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.768
30170.m014217 Ricinus communis 30170.m014217 I 0.763
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.758
ppa005903m Prunus persica ppa005903m I 0.758
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.758
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.758
MDP0000200455 Malus x domestica MDP0000200455 I 0.754
MDP0000136330 Malus x domestica MDP0000136330 I 0.754
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.749
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.749
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.749
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.744
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.744
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.744
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.740
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.739
mgf011075m Mimulus guttatus mgf011075m I 0.739
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.734
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.734
mgf000380m Mimulus guttatus mgf000380m I 0.729
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.725
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.716
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.715
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.715
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.715
mgf012795m Mimulus guttatus mgf012795m I 0.715
MDP0000176892 Malus x domestica MDP0000176892 N 0.708
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.705
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.705
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.705
MDP0000262005 Malus x domestica MDP0000262005 N 0.700
MDP0000142206 Malus x domestica MDP0000142206 N 0.700
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.700
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.700