cassava12743.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12743.valid.m1 T49112_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12743.valid.m1 RRM 8 74
cassava12743.valid.m1 RRM 107 169
cassava12743.valid.m1 RRM 235 301
cassava12743.valid.m1 RRM 345 411

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29863.m001059 Ricinus communis 29863.m001059 N 0.924
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.870
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.883
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.735
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.712
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.943
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.943
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.943
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.943
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.845
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.845
e_gw1.48.34.1 Physcomitrella patens e_gw1.48.34.1 N 0.701
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.871
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.841
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.856
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.708
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.727
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.868
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.727
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.723
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.833
mgf010164m Mimulus guttatus mgf010164m N 0.880
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.826
PK14373.1 Cannabis sativa PK14373.1 N 0.864
ppa005775m Prunus persica ppa005775m N 0.864
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.856
SB09G021560 Sorghum bicolor Sb09g021560 N 0.727
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.864