cassava19038.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava19038.valid.m1 T49163_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19038.valid.m1 RRM 8 74
cassava19038.valid.m1 RRM 107 169
cassava19038.valid.m1 RRM 255 321
cassava19038.valid.m1 RRM 365 431

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29863.m001059 Ricinus communis 29863.m001059 N 0.920
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.880
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.895
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.731
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.712
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.943
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 1.000
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 1.000
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 1.000
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.848
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.856
e_gw1.48.34.1 Physcomitrella patens e_gw1.48.34.1 N 0.708
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.875
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.856
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.867
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.712
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.723
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.883
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.739
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.727
MDP0000043338 Malus x domestica MDP0000043338 N 0.708
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.837
mgf010164m Mimulus guttatus mgf010164m N 0.887
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.841
PK14373.1 Cannabis sativa PK14373.1 N 0.886
ppa005775m Prunus persica ppa005775m N 0.867
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.867
SB09G021560 Sorghum bicolor Sb09g021560 N 0.727
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.871