estExtDG_fgenesh_newKGs_kg.C_520059 (Emiliania huxleyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExtDG_fgenesh_newKGs_kg.C_520059 T50355_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.741
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.706
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExtDG_fgenesh_newKGs_kg.C_520059 RRM 16 86
estExtDG_fgenesh_newKGs_kg.C_520059 RRM 104 175

Links

Other RRM family RBPs
Other Emiliania huxleyi RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.741
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.706
AAEL013795 Aedes aegypti AAEL013795 I 0.741
AGAP001538 Anopheles gambiae AGAP001538 I 0.748
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.748
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.706
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.755
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.748
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.748
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.748
CBN06124 Caenorhabditis brenneri CBN06124 I 0.706
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.741
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.741
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.748
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.706
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.706
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.706
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.706
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.706
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.706
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.706
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.706
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.706
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.706
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.706
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.706
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.706
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.706
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.706
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.713
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.734
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.713
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.734
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.734
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.713
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.741
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.713
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.727
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.706
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.727
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.713
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.727
GE16738 Drosophila yakuba FBgn0234234 I 0.720
GF20385 Drosophila ananassae FBgn0097392 I 0.720
GG19577 Drosophila erecta FBgn0111779 I 0.720
GH17589 Drosophila grimshawi FBgn0125059 I 0.727
GI16317 Drosophila mojavensis FBgn0139065 I 0.727
GJ15655 Drosophila virilis FBgn0202845 I 0.727
GK19717 Drosophila willistoni FBgn0221715 I 0.720
GL21313 Drosophila persimilis FBgn0158906 I 0.727
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.748
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.755
GM12470 Drosophila sechellia FBgn0167407 I 0.713
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.741
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.741
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.769
ISCW010601 Ixodes scapularis ISCW010601 I 0.713
LOC100054350 Equus caballus ENSECAG00000024737 I 0.706
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.748
MDP0000131129 Malus x domestica MDP0000131129 I 0.762
MDP0000320945 Malus x domestica MDP0000320945 I 0.762
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.748
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.755
PHUM263440 Pediculus humanus PHUM263440 I 0.720
PK08238.1 Cannabis sativa PK08238.1 I 0.755
ppa007508m Prunus persica ppa007508m I 0.769
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.706
sap-49 Caenorhabditis elegans C08B11.5 D 0.706
SB01G020190 Sorghum bicolor Sb01g020190 I 0.748
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.706
sf3b4 Danio rerio ENSDARG00000018574 D 0.706
SF3B4 Homo sapiens ENSG00000143368 I 0.706
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.706
SF3B4 Gallus gallus ENSGALG00000013352 I 0.706
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.706
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.706
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.706
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.706
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.706
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.706
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.706
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.706
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.706
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.706
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.706
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.706
Smp_067420 Schistosoma mansoni Smp_067420 D 0.706
Spx Drosophila melanogaster FBgn0015818 I 0.713
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.706
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.706
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.706