gw1.3.1887.1 (Trichoderma virens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.3.1887.1 T53223_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.3.1887.1 RRM 39 109

Links

Other RRM family RBPs
Other Trichoderma virens RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB00849.1 Alternaria brassicicola AB00849.1 N 0.732
BC1G_11068 Botrytis cinerea BC1G_11068 N 0.859
CC1G_08323 Coprinopsis cinerea CC1G_08323 N 0.704
CHGG_01938 Chaetomium globosum CHGG_01938 N 0.803
EAT91924.1 Phaeosphaeria nodorum EAT91924.1 N 0.704
estExt_fgenesh1_kg.C_130003 Mycosphaerella fijiensis estExt_fgenesh1_kg.C_130003 N 0.718
estExt_fgenesh1_kg.C_20142 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_20142 N 0.732
estExt_fgenesh1_kg.C_chr_10019 Mycosphaerella graminicola estExt_fgenesh1_kg.C_chr_10019 N 0.718
estExt_fgenesh1_pg.C_20037 Myceliophthora thermophila estExt_fgenesh1_pg.C_20037 N 0.803
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.704
estExt_fgenesh2_kg.C_40317 Thielavia terrestris estExt_fgenesh2_kg.C_40317 N 0.803
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.732
estExt_Genewise1.C_70784 Neurospora discreta estExt_Genewise1.C_70784 N 0.887
estExt_Genewise1Plus.C_110234 Trichoderma atroviride estExt_Genewise1Plus.C_110234 N 0.972
estExt_Genewise1Plus.C_50393 Neurospora tetrasperma estExt_Genewise1Plus.C_50393 N 0.887
e_gw1.4.2145.1 Cryphonectria parasitica e_gw1.4.2145.1 N 0.859
e_gww2.3.582.1 Phanerochaete chrysosporium e_gww2.3.582.1 N 0.732
fgenesh1_kg.C_scaffold_4000104 Schizophyllum commune fgenesh1_kg.C_scaffold_4000104 I 0.704
fgenesh1_pg.sca_1_chr1_3_0001239 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0001239 N 0.859
fgenesh1_pm.C_scaffold_6000172 Pleurotus ostreatus fgenesh1_pm.C_scaffold_6000172 I 0.704
FGSG_04914 Fusarium graminearum FGSG_04914 N 0.859
FOXG_05707 Fusarium oxysporum FOXG_05707 N 0.887
FVEG_03573 Fusarium verticillioides FVEG_03573 N 0.887
GLRG_00505 Colletotrichum graminicola GLRG_00505 N 0.859
GSTUMT00004748001 Tuber melanosporum GSTUMT00004748001 N 0.704
gw1.23.298.1 Trichoderma reesei gw1.23.298.1 N 0.986
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.704
MGG_03740 Magnaporthe oryzae MGG_03740 N 0.873
NCU03226 Neurospora crassa NCU03226 N 0.887
Pa_1_1890 Podospora anserina Pa_1_1890 N 0.845
PTRG_10763 Pyrenophora tritici repentis PTRG_10763 N 0.704
SNOG_00429 Stagonospora nodorum SNOG_00429 N 0.704
SS1G_12129 Sclerotinia sclerotiorum SS1G_12129 N 0.873