AAI70539 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAI70539 T59654_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.995
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.995
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.995
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.962
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.962
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.962
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.797
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.797
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.797
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.797
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.797
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.797
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI70539 RRM 68 138
AAI70539 RRM 154 222
AAI70539 RRM 307 377

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.962
AAA96943 Xenopus laevis AAA96943 I 0.995
AAA96944 Xenopus laevis AAA96944 I 0.911
AAA96945 Xenopus laevis AAA96945 I 0.957
AAH94189 Xenopus laevis AAH94189 I 1.000
AAH99348 Xenopus laevis AAH99348 I 0.957
AAI69769 Xenopus laevis AAI69769 I 0.911
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.995
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.901
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.962
CAA59430 Xenopus laevis CAA59430 I 0.991
CBF67567 Xenopus laevis CBF67567 I 0.957
CBU92440 Xenopus laevis CBU92440 I 0.957
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.995
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.972
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.911
Elavl2 Mus musculus ENSMUSG00000008489 I 0.995
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.995
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.976
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.944
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.962
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.995
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.976
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.991
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.995
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.995
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.991
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.967
ELAVL2 Homo sapiens ENSG00000107105 D 0.995
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.976
elavl2 Danio rerio ENSDARG00000040732 I 0.962
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.995
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.995
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.995
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.995
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.995
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.995
ELAVL2 Equus caballus ENSECAG00000020142 I 0.995
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 1.000
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.995
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.995
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.995
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.995
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.892
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.901
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.901
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.893
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.901
Elavl3 Mus musculus ENSMUSG00000003410 I 0.892
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.873
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.901
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.902
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.901
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.901
ELAVL3 Homo sapiens ENSG00000196361 I 0.901
elavl3 Danio rerio ENSDARG00000014420 I 0.901
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.892
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.893
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.901
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.901
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.906
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.901
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.883
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.901
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.911
ELAVL3 Myotis lucifugus ENSMLUG00000016320 N 0.000
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.962
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.962
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.948
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.957
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.962
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.962
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.948
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.962
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.962
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.873
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.958
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.962
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.962
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.962
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.953
ELAVL4 Homo sapiens ENSG00000162374 D 0.962
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.962
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.962
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.962
elavl4 Danio rerio ENSDARG00000045639 I 0.939
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.962
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.962
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.962
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.962
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.962
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.962
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.962
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.962
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.962
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.962
Elavl4 Mus musculus ENSMUSG00000028546 I 0.962
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.962
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.962
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.953
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.962
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.962
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.995
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 1.000
LOC100051268 Equus caballus ENSECAG00000022284 I 0.962
LOC100056901 Equus caballus ENSECAG00000020594 I 0.822
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.995
Q91584 Xenopus laevis Q91584 I 0.911
Q91903 Xenopus laevis Q91903 I 0.995
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.962