SAMD4B (Echinops telfairi)
SAM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00536 (SAM_1) IPR021129 ENSETEG00000004346 T61781_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SAMD4A
M061_0.6 		Homo sapiens GCKGGHM RNAcompete
Ray et al.(2013)
RNCMPT00063 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000003558 SAM 298 358

Links

Other SAM family RBPs
Other Echinops telfairi RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29912.m005480 Ricinus communis 29912.m005480 N 0.000
B9ILQ4_POPTR Populus trichocarpa POPTR_0018s09080 N 0.000
cassava29926.valid.m1 Manihot esculenta cassava29926.valid.m1 N 0.000
cassava8220.valid.m1 Manihot esculenta cassava8220.valid.m1 N 0.000
chr2.CM0660.130.nc Lotus japonicus chr2.CM0660.130.nc N 0.000
Cucsa.263190 Cucumis sativus Cucsa.263190 N 0.000
emb2726 Arabidopsis thaliana AT4G29060-TAIR-G N 0.000
Glyma01g34700.1 Glycine max Glyma01g34700.1 N 0.000
Glyma08g04060.1 Glycine max Glyma08g04060.1 N 0.000
Glyma09g32600.1 Glycine max Glyma09g32600.1 N 0.000
MDP0000169133 Malus x domestica MDP0000169133 N 0.000
mgf012735m Mimulus guttatus mgf012735m N 0.000
PDK_20s1481371g001 Phoenix dactylifera PDK_20s1481371g001 N 0.000
PK05605.1 Cannabis sativa PK05605.1 N 0.000
ppa000765m Prunus persica ppa000765m N 0.000