B9ILQ4_POPTR (Populus trichocarpa)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 POPTR_0018s09080 T60753_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s09080.1 S1 145 217
POPTR_0018s09080.1 S1 260 333

Links

Other S1 family RBPs
Other Populus trichocarpa RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29912.m005480 Ricinus communis 29912.m005480 N 0.878
cassava8220.valid.m1 Manihot esculenta cassava8220.valid.m1 N 0.872
ppa000765m Prunus persica ppa000765m N 0.845
cassava29926.valid.m1 Manihot esculenta cassava29926.valid.m1 N 0.831
MDP0000169133 Malus x domestica MDP0000169133 N 0.824
chr2.CM0660.130.nc Lotus japonicus chr2.CM0660.130.nc N 0.823
Cucsa.263190 Cucumis sativus Cucsa.263190 N 0.818
mgf012735m Mimulus guttatus mgf012735m N 0.811
PDK_20s1481371g001 Phoenix dactylifera PDK_20s1481371g001 N 0.804
MDP0000484420 Malus x domestica MDP0000484420 N 0.804
emb2726 Arabidopsis thaliana AT4G29060-TAIR-G N 0.792
PK05605.1 Cannabis sativa PK05605.1 N 0.791
Glyma09g32600.1 Glycine max Glyma09g32600.1 N 0.789
Medtr6g098870 Medicago truncatula Medtr6g098870 N 0.789
Glyma01g34700.1 Glycine max Glyma01g34700.1 N 0.784
Glyma08g04060.1 Glycine max Glyma08g04060.1 N 0.757