cassava29926.valid.m1 (Manihot esculenta)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 cassava29926.valid.m1 T60985_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29926.valid.m1 S1 146 219
cassava29926.valid.m1 S1 261 334

Links

Other S1 family RBPs
Other Manihot esculenta RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava8220.valid.m1 Manihot esculenta cassava8220.valid.m1 N 0.885
29912.m005480 Ricinus communis 29912.m005480 N 0.858
B9ILQ4_POPTR Populus trichocarpa POPTR_0018s09080 N 0.831
ppa000765m Prunus persica ppa000765m N 0.804
Cucsa.263190 Cucumis sativus Cucsa.263190 N 0.797
mgf012735m Mimulus guttatus mgf012735m N 0.791
MDP0000169133 Malus x domestica MDP0000169133 N 0.770
PDK_20s1481371g001 Phoenix dactylifera PDK_20s1481371g001 N 0.764
chr2.CM0660.130.nc Lotus japonicus chr2.CM0660.130.nc N 0.764
Glyma01g34700.1 Glycine max Glyma01g34700.1 N 0.764
Glyma08g04060.1 Glycine max Glyma08g04060.1 N 0.757
PK05605.1 Cannabis sativa PK05605.1 N 0.757
MDP0000484420 Malus x domestica MDP0000484420 N 0.750
Glyma09g32600.1 Glycine max Glyma09g32600.1 N 0.750
emb2726 Arabidopsis thaliana AT4G29060-TAIR-G N 0.745
Medtr6g098870 Medicago truncatula Medtr6g098870 N 0.736