cassava8220.valid.m1 (Manihot esculenta)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 cassava8220.valid.m1 T60993_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava8220.valid.m1 S1 147 220
cassava8220.valid.m1 S1 264 337

Links

Other S1 family RBPs
Other Manihot esculenta RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava29926.valid.m1 Manihot esculenta cassava29926.valid.m1 N 0.885
29912.m005480 Ricinus communis 29912.m005480 N 0.878
B9ILQ4_POPTR Populus trichocarpa POPTR_0018s09080 N 0.872
Cucsa.263190 Cucumis sativus Cucsa.263190 N 0.818
ppa000765m Prunus persica ppa000765m N 0.811
mgf012735m Mimulus guttatus mgf012735m N 0.811
MDP0000169133 Malus x domestica MDP0000169133 N 0.797
chr2.CM0660.130.nc Lotus japonicus chr2.CM0660.130.nc N 0.797
PDK_20s1481371g001 Phoenix dactylifera PDK_20s1481371g001 N 0.784
Glyma01g34700.1 Glycine max Glyma01g34700.1 N 0.784
emb2726 Arabidopsis thaliana AT4G29060-TAIR-G N 0.779
Glyma08g04060.1 Glycine max Glyma08g04060.1 N 0.770
Glyma09g32600.1 Glycine max Glyma09g32600.1 N 0.770
PK05605.1 Cannabis sativa PK05605.1 N 0.770
MDP0000484420 Malus x domestica MDP0000484420 N 0.770
Medtr6g098870 Medicago truncatula Medtr6g098870 N 0.770