Cucsa.263190 (Cucumis sativus)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 Cucsa.263190 T61002_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.263190.1 S1 142 215
Cucsa.263190.1 S1 253 326
Cucsa.263190.2 S1 142 215
Cucsa.263190.2 S1 253 326

Links

Other S1 family RBPs
Other Cucumis sativus RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9ILQ4_POPTR Populus trichocarpa POPTR_0018s09080 N 0.818
29912.m005480 Ricinus communis 29912.m005480 N 0.818
chr2.CM0660.130.nc Lotus japonicus chr2.CM0660.130.nc N 0.818
cassava8220.valid.m1 Manihot esculenta cassava8220.valid.m1 N 0.818
mgf012735m Mimulus guttatus mgf012735m N 0.804
ppa000765m Prunus persica ppa000765m N 0.797
cassava29926.valid.m1 Manihot esculenta cassava29926.valid.m1 N 0.797
PK05605.1 Cannabis sativa PK05605.1 N 0.791
Glyma01g34700.1 Glycine max Glyma01g34700.1 N 0.791
PDK_20s1481371g001 Phoenix dactylifera PDK_20s1481371g001 N 0.791
Glyma09g32600.1 Glycine max Glyma09g32600.1 N 0.791
MDP0000169133 Malus x domestica MDP0000169133 N 0.777
Medtr6g098870 Medicago truncatula Medtr6g098870 N 0.770
MDP0000484420 Malus x domestica MDP0000484420 N 0.764
emb2726 Arabidopsis thaliana AT4G29060-TAIR-G N 0.758
Glyma08g04060.1 Glycine max Glyma08g04060.1 N 0.750