CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
BRADI4G08050
(
Brachypodium distachyon
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BRADI4G08050
T02009_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI4G08050.1
CCCH ZF
54
79
GEPDCSYYMRTGLCRFGMTCKFNHPP
BRADI4G08050.1
CCCH ZF
99
124
GQPECQYYLKTGTCKFGATCKFHHPR
BRADI4G08050.1
CCCH ZF
144
170
PNEKECAYYLRTGQCKFASTCKFHHPQ
BRADI4G08050.1
CCCH ZF
306
332
PDQPECQFYMKTGDCKFGAVCKFNHPK
BRADI4G08050.1
CCCH ZF
352
378
PGEPVCTFYSRYGICKFGPNCKFDHPM
BRADI4G08050.4
CCCH ZF
54
79
GEPDCSYYMRTGLCRFGMTCKFNHPP
BRADI4G08050.4
CCCH ZF
99
124
GQPECQYYLKTGTCKFGATCKFHHPR
BRADI4G08050.4
CCCH ZF
144
170
PNEKECAYYLRTGQCKFASTCKFHHPQ
BRADI4G08050.4
CCCH ZF
306
332
PDQPECQFYMKTGDCKFGAVCKFNHPK
BRADI4G08050.4
CCCH ZF
352
378
PGEPVCTFYSRYGICKFGPNCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Brachypodium distachyon
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK01281.1
Cannabis sativa
PK01281.1
N
0.000
PK20504.1
Cannabis sativa
PK20504.1
N
0.000
Glyma02g46760.1
Glycine max
Glyma02g46760.1
N
0.000
Glyma08g43790.1
Glycine max
Glyma08g43790.1
N
0.000
Glyma18g09020.1
Glycine max
Glyma18g09020.1
N
0.000
MDP0000214614
Malus x domestica
MDP0000214614
N
0.000
MDP0000906147
Malus x domestica
MDP0000906147
N
0.000
cassava7063.valid.m1
Manihot esculenta
cassava7063.valid.m1
N
0.000
cassava36931.valid.m1
Manihot esculenta
cassava36931.valid.m1
N
0.000
cassava31400.valid.m1
Manihot esculenta
cassava31400.valid.m1
N
0.000
cassava31399.valid.m1
Manihot esculenta
cassava31399.valid.m1
N
0.000
cassava30652.valid.m1
Manihot esculenta
cassava30652.valid.m1
N
0.000
cassava30651.valid.m1
Manihot esculenta
cassava30651.valid.m1
N
0.000
cassava2158.valid.m1
Manihot esculenta
cassava2158.valid.m1
N
0.000
Medtr5g102170
Medicago truncatula
Medtr5g102170
N
0.000
Medtr3g077080
Medicago truncatula
Medtr3g077080
N
0.000
B9IAR9_POPTR
Populus trichocarpa
POPTR_0014s16340
N
0.000
B9GTF9_POPTR
Populus trichocarpa
POPTR_0002s22240
N
0.000
ppa003564m
Prunus persica
ppa003564m
N
0.000
ppa019338m
Prunus persica
ppa019338m
N
0.000
27613.m000645
Ricinus communis
27613.m000645
N
0.000
GSVIVG00037782001
Vitis vinifera
GSVIVG00037782001
N
0.000