CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI4G08050
(
Brachypodium distachyon
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BRADI4G08050
T02009_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI4G08050.1
CCCH ZF
54
79
GEPDCSYYMRTGLCRFGMTCKFNHPP
BRADI4G08050.1
CCCH ZF
99
124
GQPECQYYLKTGTCKFGATCKFHHPR
BRADI4G08050.1
CCCH ZF
144
170
PNEKECAYYLRTGQCKFASTCKFHHPQ
BRADI4G08050.1
CCCH ZF
306
332
PDQPECQFYMKTGDCKFGAVCKFNHPK
BRADI4G08050.1
CCCH ZF
352
378
PGEPVCTFYSRYGICKFGPNCKFDHPM
BRADI4G08050.4
CCCH ZF
54
79
GEPDCSYYMRTGLCRFGMTCKFNHPP
BRADI4G08050.4
CCCH ZF
99
124
GQPECQYYLKTGTCKFGATCKFHHPR
BRADI4G08050.4
CCCH ZF
144
170
PNEKECAYYLRTGQCKFASTCKFHHPQ
BRADI4G08050.4
CCCH ZF
306
332
PDQPECQFYMKTGDCKFGAVCKFNHPK
BRADI4G08050.4
CCCH ZF
352
378
PGEPVCTFYSRYGICKFGPNCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Brachypodium distachyon
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.820
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.828
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.828
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.827
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.821
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.940
PK23881.1
Cannabis sativa
PK23881.1
N
0.881
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.873
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.896
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.888
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.866
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.873
MDP0000577111
Malus x domestica
MDP0000577111
N
0.746
MDP0000178517
Malus x domestica
MDP0000178517
N
0.805
MDP0000665604
Malus x domestica
MDP0000665604
N
0.746
cassava35635.valid.m1
Manihot esculenta
cassava35635.valid.m1
N
0.701
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.716
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.888
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.859
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.859
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.843
mgf007299m
Mimulus guttatus
mgf007299m
N
0.830
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.947
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.784
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.837
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.970
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.992
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.806
ppa005813m
Prunus persica
ppa005813m
N
0.896
30128.m009030
Ricinus communis
30128.m009030
N
0.888
29726.m004014
Ricinus communis
29726.m004014
N
0.709
gw1.151.82.1
Selaginella moellendorfii
gw1.151.82.1
N
0.733
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.925
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.858
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.701
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.925
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.858
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.902
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.851