BRADI4G08050 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI4G08050 T02009_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G08050.1 CCCH ZF 54 79
BRADI4G08050.1 CCCH ZF 99 124
BRADI4G08050.1 CCCH ZF 144 170
BRADI4G08050.1 CCCH ZF 306 332
BRADI4G08050.1 CCCH ZF 352 378
BRADI4G08050.4 CCCH ZF 54 79
BRADI4G08050.4 CCCH ZF 99 124
BRADI4G08050.4 CCCH ZF 144 170
BRADI4G08050.4 CCCH ZF 306 332
BRADI4G08050.4 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.992
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.970
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.947
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.940
SB05G013190 Sorghum bicolor Sb05g013190 N 0.925
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.925
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.902
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.896
ppa005813m Prunus persica ppa005813m N 0.896
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.888
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.888
30128.m009030 Ricinus communis 30128.m009030 N 0.888
PK23881.1 Cannabis sativa PK23881.1 N 0.881
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.873
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.873
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.866
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.859
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.859
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.858
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.858
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.851
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.843
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.837
mgf007299m Mimulus guttatus mgf007299m N 0.830
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.828
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.828
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.827
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.821
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.820
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.806
MDP0000178517 Malus x domestica MDP0000178517 N 0.805
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.784
MDP0000665604 Malus x domestica MDP0000665604 N 0.746
MDP0000577111 Malus x domestica MDP0000577111 N 0.746
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.716
29726.m004014 Ricinus communis 29726.m004014 N 0.709
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.701
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.701