cassava30651.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava30651.valid.m1 T00840_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30651.valid.m1 CCCH ZF 235 257
cassava30651.valid.m1 RRM 372 432

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 1.000
30169.m006471 Ricinus communis 30169.m006471 N 0.976
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.966
ppa023263m Prunus persica ppa023263m N 0.940
MDP0000243086 Malus x domestica MDP0000243086 N 0.940
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.929
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.929
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.929
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.929
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.929
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.929
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.929
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.929
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.905
ppa002413m Prunus persica ppa002413m N 0.905
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.905
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.905
MDP0000120231 Malus x domestica MDP0000120231 N 0.905
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.893
SB01G036490 Sorghum bicolor Sb01g036490 N 0.893
MDP0000220601 Malus x domestica MDP0000220601 N 0.893
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.893
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.893
MDP0000120462 Malus x domestica MDP0000120462 N 0.893
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.893
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.881
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.881
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.881
SB08G001980 Sorghum bicolor Sb08g001980 N 0.869
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.869
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.869
SB02G043180 Sorghum bicolor Sb02g043180 N 0.869
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.869
MDP0000259773 Malus x domestica MDP0000259773 N 0.869
MDP0000256775 Malus x domestica MDP0000256775 N 0.869
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.869
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.869
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.869
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.857
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.857
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.857
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.857
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.857
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.851
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.851
mgf002273m Mimulus guttatus mgf002273m N 0.847
mgf014647m Mimulus guttatus mgf014647m N 0.845
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.845
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.837
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.833
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.833
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.828
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.828
ppa002383m Prunus persica ppa002383m N 0.826
SB05G001540 Sorghum bicolor Sb05g001540 N 0.821
MDP0000164538 Malus x domestica MDP0000164538 N 0.814
mgf000973m Mimulus guttatus mgf000973m N 0.812
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.802
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.802
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.791
PK18074.1 Cannabis sativa PK18074.1 N 0.791
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.786
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.782
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.782
30169.m006472 Ricinus communis 30169.m006472 N 0.779
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.774
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.762
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.738
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.738
PK20504.1 Cannabis sativa PK20504.1 N 0.729
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.726
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.724
ppa003564m Prunus persica ppa003564m N 0.718
MDP0000214614 Malus x domestica MDP0000214614 N 0.718
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.714
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714
ppa019338m Prunus persica ppa019338m N 0.713
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.701
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701