cassava2158.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava2158.valid.m1 T00833_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava2158.valid.m1 CCCH ZF 220 245
cassava2158.valid.m1 RRM 360 420

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.966
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.966
30169.m006471 Ricinus communis 30169.m006471 N 0.943
MDP0000243086 Malus x domestica MDP0000243086 N 0.908
ppa023263m Prunus persica ppa023263m N 0.908
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.897
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.897
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.897
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.897
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.897
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.897
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.897
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.897
ppa002413m Prunus persica ppa002413m N 0.874
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.874
MDP0000120231 Malus x domestica MDP0000120231 N 0.874
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.874
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.874
MDP0000120462 Malus x domestica MDP0000120462 N 0.862
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.862
SB01G036490 Sorghum bicolor Sb01g036490 N 0.862
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.862
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.862
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.862
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.862
MDP0000220601 Malus x domestica MDP0000220601 N 0.862
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.862
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.862
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.851
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.851
SB02G043180 Sorghum bicolor Sb02g043180 N 0.839
MDP0000259773 Malus x domestica MDP0000259773 N 0.839
MDP0000256775 Malus x domestica MDP0000256775 N 0.839
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.839
mgf002273m Mimulus guttatus mgf002273m N 0.839
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.839
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.839
SB08G001980 Sorghum bicolor Sb08g001980 N 0.839
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.839
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.839
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.839
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.839
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.839
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.839
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.828
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.828
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.828
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.828
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.828
ppa002383m Prunus persica ppa002383m N 0.828
mgf014647m Mimulus guttatus mgf014647m N 0.816
MDP0000164538 Malus x domestica MDP0000164538 N 0.816
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.816
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.805
mgf000973m Mimulus guttatus mgf000973m N 0.805
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.805
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.805
PK18074.1 Cannabis sativa PK18074.1 N 0.793
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.793
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.793
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.793
SB05G001540 Sorghum bicolor Sb05g001540 N 0.793
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.793
30169.m006472 Ricinus communis 30169.m006472 N 0.782
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.759
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.747
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.736
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.724
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.713
ppa019338m Prunus persica ppa019338m N 0.713
PK20504.1 Cannabis sativa PK20504.1 N 0.713
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.713
MDP0000214614 Malus x domestica MDP0000214614 N 0.701
MDP0000214403 Malus x domestica MDP0000214403 N 0.701
ppa003564m Prunus persica ppa003564m N 0.701
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.701
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.701