CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os02g19840
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g19840
T10898_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g19840.1
CCHC ZF
228
245
GPCFNCGKHGHFAGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
226 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.000
CC1G_13963
Coprinopsis cinerea
CC1G_13963
N
0.000
EuGene2000855
Heterobasidion annosum
EuGene2000855
N
0.000
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.000
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.000
estExt_Genewise1.C_220013
Postia placenta
estExt_Genewise1.C_220013
N
0.000
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.000