LOC_Os03g33319 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os03g33319 T11049_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g33319.1 CCHC ZF 227 244

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.000
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.000
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.000
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.000
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.000
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.000
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.000
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.000
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.000
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.000
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.000
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.000
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.000
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.000
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.000
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.000
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.000
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.000
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.000
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.000
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.000
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.000
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.000
MDP0000321343 Malus x domestica MDP0000321343 N 0.000
MDP0000640144 Malus x domestica MDP0000640144 N 0.000
MDP0000179037 Malus x domestica MDP0000179037 N 0.000
MDP0000284705 Malus x domestica MDP0000284705 N 0.000
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.000
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.000
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.000
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.000
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.000
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.000
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.000
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.000
mgf004170m Mimulus guttatus mgf004170m N 0.000
mgf001260m Mimulus guttatus mgf001260m N 0.000
mgf010816m Mimulus guttatus mgf010816m N 0.000
mgf001805m Mimulus guttatus mgf001805m N 0.000
mgf003009m Mimulus guttatus mgf003009m N 0.000
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.000
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.000
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.000
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.000
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.000
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.000
1600010121 Ostreococcus tauri 1600010121 N 0.000
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.000
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.000
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.000
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.000
PITG_05688 Phytophthora infestans PITG_05688 N 0.000
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.000
s_458600 Phytophthora sojae s_458600 N 0.000
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.000
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.000
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.000
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.000
ppa025949m Prunus persica ppa025949m N 0.000
ppa008459m Prunus persica ppa008459m N 0.000
29092.m000448 Ricinus communis 29092.m000448 N 0.000
29991.m000639 Ricinus communis 29991.m000639 N 0.000
30170.m013808 Ricinus communis 30170.m013808 N 0.000
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.000
SB09G028530 Sorghum bicolor Sb09g028530 N 0.000
SB03G030670 Sorghum bicolor Sb03g030670 N 0.000
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.000
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.000
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.000
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.000
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.000
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.000
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.000
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.000