CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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30128.m009003
(
Ricinus communis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
30128.m009003
T13216_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
30128.m009003
CCHC ZF
751
768
GSCFNCGRSGHRASDCPN
Links
Other
CCHC ZF
family RBPs
Other
Ricinus communis
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCJAG00000002042
Callithrix jacchus
ENSCJAG00000002042
N
0.000
LOC100392844
Callithrix jacchus
ENSCJAG00000019154
N
0.000
ENSCHOG00000001614
Choloepus hoffmanni
ENSCHOG00000001614
N
0.000
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.000
HNRNPH1
Dasypus novemcinctus
ENSDNOG00000007173
N
0.000
ENSDORG00000008260
Dipodomys ordii
ENSDORG00000008260
N
0.000
Hnrnph3
Dipodomys ordii
ENSDORG00000011470
N
0.000
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.000
HNRNPH1
Tetraodon nigroviridis
ENSTNIG00000008997
N
0.000