CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Unr
(
Drosophila melanogaster
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0035895
T17076_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0076384
CSD
186
251
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0076384
CSD
274
337
SANNVLNSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0076384
CSD
345
413
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNITR
FBpp0076384
CSD
517
584
REQGTIASLKEGFGFLRCVERQARLFFHFTEVLDTSREIDINDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0076384
CSD
763
824
VYRGFIAVMKENFGFIETLSHDEEVFFHFSNYMGNPNWLELGQEVEYTLARNGNTSVSGNCL
FBpp0076384
CSD
922
988
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
FBpp0113084
CSD
186
251
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0113084
CSD
274
337
SANNVLNSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0113084
CSD
345
401
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSVSGSG
FBpp0113084
CSD
535
602
REQGTIASLKEGFGFLRCVERQARLFFHFTEVLDTSREIDINDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0113084
CSD
781
842
VYRGFIAVMKENFGFIETLSHDEEVFFHFSNYMGNPNWLELGQEVEYTLARNGNTSVSGNCL
FBpp0113084
CSD
940
1006
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila melanogaster
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.738
AGAP004937
Anopheles gambiae
AGAP004937
N
0.751
GF10107
Drosophila ananassae
FBgn0087148
N
0.972
GG15082
Drosophila erecta
FBgn0107336
N
1.000
GH16406
Drosophila grimshawi
FBgn0123877
N
0.965
GI12487
Drosophila mojavensis
FBgn0135244
N
0.965
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.970
GM24938
Drosophila sechellia
FBgn0179800
N
1.000
GJ12391
Drosophila virilis
FBgn0199634
N
0.907
GK17751
Drosophila willistoni
FBgn0219750
N
0.962
GE21305
Drosophila yakuba
FBgn0238572
N
0.997