AAI30161 (Xenopus laevis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 AAI30161 T17420_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI30161 CSD 56 126

Links

Other CSD family RBPs
Other Xenopus laevis RBPs

213 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTTG_01003 Puccinia triticina PTTG_01003 N 0.000
PTTG_09697 Puccinia triticina PTTG_09697 N 0.000
PTTG_09518 Puccinia triticina PTTG_09518 N 0.000
PTTG_09362 Puccinia triticina PTTG_09362 N 0.000
PTTG_09070 Puccinia triticina PTTG_09070 N 0.000
PTTG_09062 Puccinia triticina PTTG_09062 N 0.000
PTTG_08980 Puccinia triticina PTTG_08980 N 0.000
PTTG_08960 Puccinia triticina PTTG_08960 N 0.000
PTTG_08665 Puccinia triticina PTTG_08665 N 0.000
PTTG_10004 Puccinia triticina PTTG_10004 N 0.000
PTTG_10119 Puccinia triticina PTTG_10119 N 0.000
PTTG_11057 Puccinia triticina PTTG_11057 N 0.000
PTTG_10751 Puccinia triticina PTTG_10751 N 0.000
PTTG_10706 Puccinia triticina PTTG_10706 N 0.000
PTTG_10688 Puccinia triticina PTTG_10688 N 0.000
PTTG_10645 Puccinia triticina PTTG_10645 N 0.000
PTTG_10464 Puccinia triticina PTTG_10464 N 0.000
PTTG_10344 Puccinia triticina PTTG_10344 N 0.000
PTTG_10291 Puccinia triticina PTTG_10291 N 0.000
PTTG_08342 Puccinia triticina PTTG_08342 N 0.000
PTTG_08329 Puccinia triticina PTTG_08329 N 0.000
PTTG_05279 Puccinia triticina PTTG_05279 N 0.000
PTTG_05245 Puccinia triticina PTTG_05245 N 0.000
PTTG_05127 Puccinia triticina PTTG_05127 N 0.000
PTTG_04681 Puccinia triticina PTTG_04681 N 0.000
PTTG_04497 Puccinia triticina PTTG_04497 N 0.000
PTTG_03611 Puccinia triticina PTTG_03611 N 0.000
PTTG_03581 Puccinia triticina PTTG_03581 N 0.000
PTTG_01306 Puccinia triticina PTTG_01306 N 0.000
PTTG_05310 Puccinia triticina PTTG_05310 N 0.000
PTTG_05387 Puccinia triticina PTTG_05387 N 0.000
PTTG_07232 Puccinia triticina PTTG_07232 N 0.000
PTTG_07053 Puccinia triticina PTTG_07053 N 0.000
PTTG_06885 Puccinia triticina PTTG_06885 N 0.000
PTTG_06752 Puccinia triticina PTTG_06752 N 0.000
PTTG_06677 Puccinia triticina PTTG_06677 N 0.000
PTTG_06629 Puccinia triticina PTTG_06629 N 0.000
PTTG_06000 Puccinia triticina PTTG_06000 N 0.000
PTTG_05476 Puccinia triticina PTTG_05476 N 0.000
GRMZM2G069218 Zea mays GRMZM2G069218 N 0.000