KHDRBS3 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000013451 T19658_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHDRBS3
M033_0.6 		Homo sapiens AUAAAV RNAcompete
Ray et al.(2013)
RNCMPT00034 		0.940
KHDRBS2
M176_0.6 		Homo sapiens RAUAAAM RNAcompete
Ray et al.(2013)
RNCMPT00185 		0.810
KHDRBS1
M160_0.6 		Homo sapiens AUAAAAV RNAcompete
Ray et al.(2013)
RNCMPT00169 		0.729
Khdrbs1
M060_0.6 		Mus musculus UAAAAVV RNAcompete
Ray et al.(2013)
RNCMPT00062 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000034291 KH 29 111
ENSTRUP00000034292 KH 29 112
ENSTRUP00000034293 KH 29 111

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.000
AIN1 Arabidopsis thaliana AT1G54490-TAIR-G N 0.000
XRN2 Arabidopsis thaliana AT5G42540-TAIR-G N 0.000
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.000
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.000
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.000
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.000
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.000
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.000
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.000
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.000
MDP0000127462 Malus x domestica MDP0000127462 N 0.000
MDP0000214139 Malus x domestica MDP0000214139 N 0.000
MDP0000274866 Malus x domestica MDP0000274866 N 0.000
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.000
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.000
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.000
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.000
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.000
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.000
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.000
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.000
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.000
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.000
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.000
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.000
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.000
Medtr1g096550 Medicago truncatula Medtr1g096550 N 0.000
mgf012893m Mimulus guttatus mgf012893m N 0.000
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.000
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.000
PDK_20s1528451g001 Phoenix dactylifera PDK_20s1528451g001 N 0.000
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.000
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.000
ppa000881m Prunus persica ppa000881m N 0.000
30170.m014167 Ricinus communis 30170.m014167 N 0.000
30128.m008637 Ricinus communis 30128.m008637 N 0.000
SB01G005340 Sorghum bicolor Sb01g005340 N 0.000
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.000