CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pa_2_11350
(
Podospora anserina
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
Pa_2_11350
T25894_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pa_2_11350
RRM
258
328
LHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQSKPTGSGFAVFSSHEEAAESLCMNGRALNEKAIE
Pa_2_11350
RanBP ZF
355
383
RPGDWTCPSCGFSNFQRRTACFRCSFPAV
Pa_2_11350
RanBP ZF
433
462
RAGDWKCGNEVCGYHNFAKNQNCLRCGAGR
Links
Other
RanBP ZF,RRM
family RBPs
Other
Podospora anserina
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.000
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.000
PK00513.1
Cannabis sativa
PK00513.1
N
0.000
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.000
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.000
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.000
MDP0000130865
Malus x domestica
MDP0000130865
N
0.000
MDP0000173934
Malus x domestica
MDP0000173934
N
0.000
MDP0000217366
Malus x domestica
MDP0000217366
N
0.000
MDP0000286430
Malus x domestica
MDP0000286430
N
0.000
MDP0000320861
Malus x domestica
MDP0000320861
N
0.000
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.000
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.000
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.000
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.000
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.000
mgf023368m
Mimulus guttatus
mgf023368m
N
0.000
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.000
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.000
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.000
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.000
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.000
ppa005309m
Prunus persica
ppa005309m
N
0.000
ppa005979m
Prunus persica
ppa005979m
N
0.000
30008.m000830
Ricinus communis
30008.m000830
N
0.000
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.000
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.000
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.000
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.000
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.000
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.000