CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPIJ019416
(
Culex quinquefasciatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPIJ019416
T34342_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPIJ019416-PA
RRM
171
240
VFCMQLSQRIRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFRDPESVALALGLSGQRLLGIPIS
CPIJ019416-PA
RRM
269
339
LYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMK
CPIJ019416-PA
RRM
439
495
IEDDVIEECNKHGGVLHVYVDKQSPAGNVYVKCPSIATAVLAVNALHGRWFAGRVIA
Links
Other
RRM
family RBPs
Other
Culex quinquefasciatus
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s7518g10t1
Acyrtosiphon pisum
DGIL_AUG5s7518g10t1
N
0.810
AAEL005046
Aedes aegypti
AAEL005046
N
0.960
Ame_R004270
Ailuropoda melanoleuca
Ame_R004270
N
0.774
RBM39
Anolis carolinensis
ENSACAG00000006436
N
0.778
AGAP008433
Anopheles gambiae
AGAP008433
N
0.945
amel4_ncbi_hmm11379
Apis mellifera
amel4_ncbi_hmm11379
N
0.889
Q2HJD8_BOVIN
Bos taurus
ENSBTAG00000003949
N
0.774
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.774
RBM39
Canis familiaris
ENSCAFG00000008327
N
0.774
RBM39
Cavia porcellus
ENSCPOG00000014625
N
0.710
CpipJ_CPIJ014704
Culex pipiens
CpipJ_CPIJ014704
N
1.000
CpipJ_CPIJ019416
Culex pipiens
CpipJ_CPIJ019416
N
1.000
CPIJ014704
Culex quinquefasciatus
CPIJ014704
N
1.000
rbm39a
Danio rerio
ENSDARG00000011613
N
0.778
rbm39b
Danio rerio
ENSDARG00000041853
N
0.742
estExt_Genewise1Plus.C_150014
Daphnia pulex
estExt_Genewise1Plus.C_150014
N
0.808
GF14957
Drosophila ananassae
FBgn0091982
N
0.884
GG10454
Drosophila erecta
FBgn0102763
N
0.889
GH13506
Drosophila grimshawi
FBgn0120982
N
0.875
CG11266
Drosophila melanogaster
FBgn0031883
N
0.884
GI10246
Drosophila mojavensis
FBgn0133011
N
0.879
GA10876-RA
Drosophila pseudoobscura
FBgn0070932
N
0.874
GM16278
Drosophila sechellia
FBgn0171194
N
0.884
GD23448
Drosophila simulans
FBgn0194830
N
0.884
GJ18017
Drosophila virilis
FBgn0205182
N
0.866
GK15272
Drosophila willistoni
FBgn0217277
N
0.874
GE14328
Drosophila yakuba
FBgn0231943
N
0.889
RBM39
Equus caballus
ENSECAG00000013423
N
0.774
RBM39
Gallus gallus
ENSGALG00000001550
N
0.778
RBM23
Gasterosteus aculeatus
ENSGACG00000002797
N
0.734
RBM23
Gasterosteus aculeatus
ENSGACG00000003376
N
0.742
RBM39
Gorilla gorilla
ENSGGOG00000003950
N
0.764
RBM39
Homo sapiens
ENSG00000131051
N
0.774
estExt_Genewise1.C_sca_90322
Lottia gigantea
estExt_Genewise1.C_sca_90322
N
0.774
RBM39
Loxodonta africana
ENSLAFG00000010346
N
0.774
RBM39
Meleagris gallopavo
ENSMGAG00000001509
N
0.773
RBM39
Microcebus murinus
ENSMICG00000001668
N
0.774
RBM39
Monodelphis domestica
ENSMODG00000001557
N
0.766
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.774
B7NZJ5_RABIT
Oryctolagus cuniculus
ENSOCUG00000007050
N
0.774
RBM23
Oryzias latipes
ENSORLG00000009919
N
0.768
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.773
RBM39
Otolemur garnettii
ENSOGAG00000011227
N
0.739
RBM39
Pan troglodytes
ENSPTRG00000013449
N
0.774
PHUM394230
Pediculus humanus
PHUM394230
N
0.869
ENSPPYG00000010963
Pongo pygmaeus
ENSPPYG00000010963
N
0.774
RBM39
Pteropus vampyrus
ENSPVAG00000014944
N
0.774
Rbm39
Rattus norvegicus
ENSRNOG00000019848
N
0.774
Sjc_0034270
Schistosoma japonicum
Sjc_0034270
N
0.714
Smp_064590
Schistosoma mansoni
Smp_064590
N
0.714
RBM39
Sorex araneus
ENSSARG00000007673
N
0.774
RBM39
Sus scrofa
ENSSSCG00000007309
N
0.774
RBM39
Taeniopygia guttata
ENSTGUG00000003048
N
0.778
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.768
RBM39
Tarsius syrichta
ENSTSYG00000005605
N
0.774
RBM23
Tetraodon nigroviridis
ENSTNIG00000017904
N
0.768
RBM39
Tursiops truncatus
ENSTTRG00000017039
N
0.774
AAH75146
Xenopus laevis
AAH75146
N
0.749
AAH77813
Xenopus laevis
AAH77813
N
0.759
rbm39
Xenopus tropicalis
ENSXETG00000007434
N
0.764