RALY (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000003636 T37413_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.844
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000004769 RRM 23 86

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.875
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.734
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.734
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.734
RALY Anolis carolinensis ENSACAG00000008983 I 0.859
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.734
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.875
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.000
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.734
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.000
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.828
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.844
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.734
RALY Canis familiaris ENSCAFG00000007490 I 0.875
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.734
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.719
RALY Cavia porcellus ENSCPOG00000000309 I 0.859
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.719
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.875
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.750
zgc:55733 Danio rerio ENSDARG00000022579 I 0.000
raly Danio rerio ENSDARG00000059972 I 0.922
zgc:55701 Danio rerio ENSDARG00000053810 I 0.000
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.859
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.734
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.734
Raly Dipodomys ordii ENSDORG00000013400 I 0.875
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.750
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.859
RALYL Echinops telfairi ENSETEG00000014028 I 0.750
LOC100054239 Equus caballus ENSECAG00000012357 I 0.875
LOC100059269 Equus caballus ENSECAG00000017645 I 0.734
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.719
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.750
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.828
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
RALY Gallus gallus ENSGALG00000002054 I 0.859
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.000
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.000
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.000
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.000
RALY Gorilla gorilla ENSGGOG00000022709 I 0.844
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.734
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.000
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.000
RALY Homo sapiens ENSG00000125970 D 0.844
HNRNPC Homo sapiens ENSG00000092199 D 0.734
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.734
RALY Loxodonta africana ENSLAFG00000000321 I 0.875
RALYL Macaca mulatta ENSMMUG00000031878 I 0.750
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.750
RALY Macaca mulatta ENSMMUG00000018093 I 0.844
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.734
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.703
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.734
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.719
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.859
RALYL Microcebus murinus ENSMICG00000005558 I 0.750
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.859
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.719
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.000
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.734
Ralyl Mus musculus ENSMUSG00000039717 I 0.750
Raly Mus musculus ENSMUSG00000027593 I 0.875
RALY Myotis lucifugus ENSMLUG00000005330 I 0.875
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.734
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.750
RALY Ochotona princeps ENSOPRG00000008423 I 0.828
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.719
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.719
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.719
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.734
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.734
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.734
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.844
RALYL Oryzias latipes ENSORLG00000017934 I 0.719
RALYL Oryzias latipes ENSORLG00000012719 I 0.703
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.719
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.703
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.734
RALYL Pan troglodytes ENSPTRG00000020381 I 0.750
RALY Pan troglodytes ENSPTRG00000013410 I 0.844
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.734
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.000
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.703
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.844
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.734
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.750
RALY Procavia capensis ENSPCAG00000016867 I 0.891
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.000
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.734
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.750
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.844
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.734
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.734
Raly Rattus norvegicus ENSRNOG00000017405 I 0.875
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.844
HNRNPC Sorex araneus ENSSARG00000003711 I 0.734
RALYL Sorex araneus ENSSARG00000002374 I 0.750
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.703
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.719
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.875
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.875
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.875
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.844
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.750
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.000
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.750
RALY Tarsius syrichta ENSTSYG00000002598 I 0.859
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.734
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.719
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.719
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.734
RALY Tupaia belangeri ENSTBEG00000009812 I 0.844
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.734
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.734
RALY Tursiops truncatus ENSTTRG00000006590 I 0.875
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.750
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.734
RALY Vicugna pacos ENSVPAG00000000373 I 0.875
RALYL Vicugna pacos ENSVPAG00000008501 I 0.750
P19600 Xenopus laevis P19600 I 0.703
AAH41534 Xenopus laevis AAH41534 I 0.719
AAH71084 Xenopus laevis AAH71084 I 0.703
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.703
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.719
raly Xenopus tropicalis ENSXETG00000019514 I 0.906