RALY (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000003636 T37413_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.844
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000004769 RRM 23 86

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
raly Danio rerio ENSDARG00000059972 I 0.922
raly Xenopus tropicalis ENSXETG00000019514 I 0.906
RALY Procavia capensis ENSPCAG00000016867 I 0.891
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.875
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.875
Raly Rattus norvegicus ENSRNOG00000017405 I 0.875
RALY Tursiops truncatus ENSTTRG00000006590 I 0.875
LOC100054239 Equus caballus ENSECAG00000012357 I 0.875
RALY Vicugna pacos ENSVPAG00000000373 I 0.875
RALY Canis familiaris ENSCAFG00000007490 I 0.875
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.875
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.875
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.875
Raly Mus musculus ENSMUSG00000027593 I 0.875
Raly Dipodomys ordii ENSDORG00000013400 I 0.875
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.875
RALY Myotis lucifugus ENSMLUG00000005330 I 0.875
RALY Loxodonta africana ENSLAFG00000000321 I 0.875
RALY Anolis carolinensis ENSACAG00000008983 I 0.859
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.859
RALY Tarsius syrichta ENSTSYG00000002598 I 0.859
RALY Gallus gallus ENSGALG00000002054 I 0.859
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.859
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.859
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.859
RALY Cavia porcellus ENSCPOG00000000309 I 0.859
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.844
RALY Pan troglodytes ENSPTRG00000013410 I 0.844
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.844
RALY Homo sapiens ENSG00000125970 D 0.844
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.844
RALY Tupaia belangeri ENSTBEG00000009812 I 0.844
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.844
RALY Gorilla gorilla ENSGGOG00000022709 I 0.844
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.844
RALY Macaca mulatta ENSMMUG00000018093 I 0.844
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.844
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.828
RALY Ochotona princeps ENSOPRG00000008423 I 0.828
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.828
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.750
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.750
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.750
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.750
RALYL Macaca mulatta ENSMMUG00000031878 I 0.750
RALYL Microcebus murinus ENSMICG00000005558 I 0.750
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.750
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.750
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.750
RALYL Vicugna pacos ENSVPAG00000008501 I 0.750
Ralyl Mus musculus ENSMUSG00000039717 I 0.750
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.750
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.750
RALYL Sorex araneus ENSSARG00000002374 I 0.750
RALYL Echinops telfairi ENSETEG00000014028 I 0.750
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.750
RALYL Pan troglodytes ENSPTRG00000020381 I 0.750
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.734
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.734
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.734
LOC100059269 Equus caballus ENSECAG00000017645 I 0.734
HNRNPC Homo sapiens ENSG00000092199 D 0.734
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.734
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.734
HNRNPC Sorex araneus ENSSARG00000003711 I 0.734
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.734
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.734
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.734
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.734
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.734
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.734
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.734
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.734
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.734
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.734
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.734
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.734
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.734
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.734
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.734
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.734
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.734
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.734
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.734
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.734
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.734
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.734
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.734
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.734
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.719
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.719
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.719
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.719
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.719
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.719
AAH41534 Xenopus laevis AAH41534 I 0.719
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.719
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.719
RALYL Oryzias latipes ENSORLG00000017934 I 0.719
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.719
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.719
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.719
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.719
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.719
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.703
RALYL Oryzias latipes ENSORLG00000012719 I 0.703
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.703
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.703
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.703
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.703
AAH71084 Xenopus laevis AAH71084 I 0.703
AAA60937 Xenopus laevis AAA60937 I 0.703
P19600 Xenopus laevis P19600 I 0.703