RALY (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000003715 T41883_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.953
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.812
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000003830 RRM 23 86

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.984
RALY Gallus gallus ENSGALG00000002054 I 0.984
RALY Cavia porcellus ENSCPOG00000000309 I 0.969
RALY Anolis carolinensis ENSACAG00000008983 I 0.969
Raly Rattus norvegicus ENSRNOG00000017405 I 0.953
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.953
RALY Canis familiaris ENSCAFG00000007490 I 0.953
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.953
Raly Dipodomys ordii ENSDORG00000013400 I 0.953
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.953
RALY Homo sapiens ENSG00000125970 D 0.953
RALY Myotis lucifugus ENSMLUG00000005330 I 0.953
RALY Macaca mulatta ENSMMUG00000018093 I 0.953
Raly Mus musculus ENSMUSG00000027593 I 0.953
RALY Loxodonta africana ENSLAFG00000000321 I 0.953
RALY Gorilla gorilla ENSGGOG00000022709 I 0.953
RALY Pan troglodytes ENSPTRG00000013410 I 0.953
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.953
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.953
LOC100054239 Equus caballus ENSECAG00000012357 I 0.953
RALY Vicugna pacos ENSVPAG00000000373 I 0.953
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.953
RALY Tursiops truncatus ENSTTRG00000006590 I 0.953
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.953
RALY Procavia capensis ENSPCAG00000016867 I 0.938
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.938
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.938
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.938
RALY Ochotona princeps ENSOPRG00000008423 I 0.938
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.938
raly Danio rerio ENSDARG00000059972 I 0.922
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.922
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.922
RALY Tupaia belangeri ENSTBEG00000009812 I 0.922
raly Xenopus tropicalis ENSXETG00000019514 I 0.922
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.922
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.922
RALY Tarsius syrichta ENSTSYG00000002598 I 0.906
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.906
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.844
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.828
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.812
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.812
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.812
RALYL Pan troglodytes ENSPTRG00000020381 I 0.812
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.812
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.812
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.812
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.812
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.812
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.812
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.812
Ralyl Mus musculus ENSMUSG00000039717 I 0.812
RALYL Macaca mulatta ENSMMUG00000031878 I 0.812
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.812
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.812
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.812
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.812
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.812
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.812
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.812
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.812
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.812
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.812
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.812
HNRNPC Sorex araneus ENSSARG00000003711 I 0.812
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.812
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.812
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.812
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.812
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.812
LOC100059269 Equus caballus ENSECAG00000017645 I 0.812
HNRNPC Homo sapiens ENSG00000092199 D 0.812
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.812
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.812
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.797
AAH41534 Xenopus laevis AAH41534 I 0.797
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.797
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.797
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.797
RALYL Sorex araneus ENSSARG00000002374 I 0.797
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.797
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.797
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.797
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.797
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.797
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.797
RALYL Echinops telfairi ENSETEG00000014028 I 0.797
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.797
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.797
RALYL Microcebus murinus ENSMICG00000005558 I 0.797
RALYL Vicugna pacos ENSVPAG00000008501 I 0.797
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.797
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.797
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.797
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.797
RALYL Oryzias latipes ENSORLG00000017934 I 0.781
RALYL Oryzias latipes ENSORLG00000012719 I 0.781
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.781
LOC770541 Gallus gallus ENSGALG00000015797 I 0.781
P19600 Xenopus laevis P19600 I 0.781
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.781
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.781
AAA60937 Xenopus laevis AAA60937 I 0.781
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.781
AAH71084 Xenopus laevis AAH71084 I 0.781
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.781
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.781
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.781
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.781
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.781
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.766
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.766
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.766
zgc:55733 Danio rerio ENSDARG00000022579 I 0.750
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.750
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.750
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.750
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.750
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.750
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.750
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.734
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.734
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.719
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.719
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.719
zgc:55701 Danio rerio ENSDARG00000053810 I 0.719
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.703
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.703
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.703