raly (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000019514 T42924_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.906
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.797
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000042241 RRM 19 82

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
raly Danio rerio ENSDARG00000059972 I 0.953
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.938
RALY Gallus gallus ENSGALG00000002054 I 0.938
RALY Loxodonta africana ENSLAFG00000000321 I 0.922
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.922
RALY Canis familiaris ENSCAFG00000007490 I 0.922
Raly Mus musculus ENSMUSG00000027593 I 0.922
RALY Myotis lucifugus ENSMLUG00000005330 I 0.922
Raly Dipodomys ordii ENSDORG00000013400 I 0.922
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.922
LOC100054239 Equus caballus ENSECAG00000012357 I 0.922
RALY Cavia porcellus ENSCPOG00000000309 I 0.922
Raly Rattus norvegicus ENSRNOG00000017405 I 0.922
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.922
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.922
RALY Tursiops truncatus ENSTTRG00000006590 I 0.922
RALY Vicugna pacos ENSVPAG00000000373 I 0.922
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.922
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.922
RALY Anolis carolinensis ENSACAG00000008983 I 0.922
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.922
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.906
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.906
RALY Macaca mulatta ENSMMUG00000018093 I 0.906
RALY Homo sapiens ENSG00000125970 D 0.906
RALY Gorilla gorilla ENSGGOG00000022709 I 0.906
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.906
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.906
RALY Pan troglodytes ENSPTRG00000013410 I 0.906
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.906
RALY Procavia capensis ENSPCAG00000016867 I 0.906
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.891
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.891
RALY Tupaia belangeri ENSTBEG00000009812 I 0.891
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.891
RALY Ochotona princeps ENSOPRG00000008423 I 0.891
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.891
RALY Tarsius syrichta ENSTSYG00000002598 I 0.875
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.875
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.875
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.812
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.812
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.797
Ralyl Mus musculus ENSMUSG00000039717 I 0.797
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.797
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.797
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.797
RALYL Pan troglodytes ENSPTRG00000020381 I 0.797
RALYL Macaca mulatta ENSMMUG00000031878 I 0.797
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.797
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.797
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.797
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.797
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.797
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.797
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.797
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.797
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.797
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.797
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.797
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.797
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.797
HNRNPC Sorex araneus ENSSARG00000003711 I 0.797
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.797
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.797
HNRNPC Homo sapiens ENSG00000092199 D 0.797
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.797
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.797
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.797
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.797
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.797
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.797
LOC100059269 Equus caballus ENSECAG00000017645 I 0.797
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.797
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.797
RALYL Sorex araneus ENSSARG00000002374 I 0.781
AAH41534 Xenopus laevis AAH41534 I 0.781
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.781
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.781
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.781
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.781
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.781
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.781
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.781
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.781
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.781
RALYL Echinops telfairi ENSETEG00000014028 I 0.781
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.781
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.781
RALYL Vicugna pacos ENSVPAG00000008501 I 0.781
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.781
RALYL Microcebus murinus ENSMICG00000005558 I 0.781
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.781
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.781
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.781
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.781
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.781
LOC770541 Gallus gallus ENSGALG00000015797 I 0.766
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.766
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.766
RALYL Oryzias latipes ENSORLG00000017934 I 0.766
AAH71084 Xenopus laevis AAH71084 I 0.766
P19600 Xenopus laevis P19600 I 0.766
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.766
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.766
AAA60937 Xenopus laevis AAA60937 I 0.766
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.766
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.766
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.766
RALYL Oryzias latipes ENSORLG00000012719 I 0.766
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.750
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.750
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.750
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.734
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.734
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.734
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.734
zgc:55733 Danio rerio ENSDARG00000022579 I 0.734
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.734
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.734
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.734
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.719
zgc:55701 Danio rerio ENSDARG00000053810 I 0.719
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.719
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.719
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.703
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.703
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.703